Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0194 ATGGGCAGCCTCCATTCTCCCCCCGCCCGCCCCGCCCGCCACCCCAACTTCCGCGGAATCCGCTCTCGAAGCGGCAAATGGGTCTCTGAGATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAAGGCCCCGATGCCTCCCTTAATTTCCCCGACTCTCTCTCATCCTATCACATTCCCTCTTCCACTTCCGCTTCCGACATTCGCGCCGCCGCCGCCCTCGCTGCTGCTTCCAGACGCCCCATTAACCCCGACGCTACTGCTGCTACTGCTGCTGCTGATGCAGACACCCATCAGCTAGATGAGGCTGGGCCGTCTTCCGACGCCGCCGCGGATTCTGCCGGAGAGTTTTTGGACGAGGAGGAGTTACTCAACATGCCGAATTTACTAGTGGACATGGCCGAGGGAATGCTCGTCAGTCCGCCCAGGATGAAGTCGCCGTCTTCAGATGACTCTCCGACCAACTCTCAGGGGGATGGATTATGGAGTTACTCCTAA 561 61.14 MGSLHSPPARPARHPNFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFPDSLSSYHIPSSTSASDIRAAAALAAASRRPINPDATAATAAADADTHQLDEAGPSSDAAADSAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1772564 1773124 + Maker00002851 Lcy6g0194 634638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0194 186 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 MobiDBLite consensus disorder prediction 166 186 - -
Lcy6g0194 186 MobiDBLite consensus disorder prediction 94 139 - -
Lcy6g0194 186 Gene3D AP2/ERF domain 16 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 CDD AP2 15 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677(InterPro)
Lcy6g0194 186 SMART rav1_2 16 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 185 IPR045277 GO:0003700(InterPro)
Lcy6g0194 186 ProSiteProfiles AP2/ERF domain profile. 16 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 Pfam AP2 domain 15 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0194 186 MobiDBLite consensus disorder prediction 158 186 - -
Lcy6g0194 186 MobiDBLite consensus disorder prediction 1 25 - -
Lcy6g0194 186 FunFam Ethylene-responsive transcription factor 2 16 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1274 Lcy-Chr1:12101022 Lcy6g0194 Lcy-Chr6:1772564 2.70E-35 dispersed
Lcy6g0194 Lcy-Chr6:1772564 Lcy6g1927 Lcy-Chr6:40315238 2.61E-56 dispersed
Lcy6g0194 Lcy-Chr6:1772564 Lcy6g0195 Lcy-Chr6:1783972 2.02E-33 tandem
Lcy12g1703 Lcy-Chr12:37515528 Lcy6g0194 Lcy-Chr6:1772564 4.02E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20222 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0194 - - - 0.0