Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0195 ATGGATATCTTTCCAAGTTTTTATGAAGAGTTGTCGAGCTCGGAGAGTAGTAATTGCCGGCGGGCCATTTTTTCCGACGAGGAGGTTATGTTGGCGGCGTGCAATCCCAAGAAGAGGGCAGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTTTACAGAGGAGTCAGGCGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTTAGAGAGCCCAACAAGAAGTCCAGAATTTGGCTTGGGACCTTTCCGACTGCGGAGATGGCGGCTCGTGCCCACGACGTGGCGGCGATGGCGCTCAGAGGTCGCTCTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCGGTGCCGGCGTCCGCTGACGCCAGAGATATTCAGAAGGCGGCGGCGGCAGCGGCAGAGGCATTCCGGCAGGTTGAGTCAGATGGGTCTTCCGTAGATGATTCAAGGGCGGAAAATGGGATGACGGTGGAGACGGCGGCGACGGAGCCGGAAAACGTGTTTTACATGGATGAAGAGGCAGTTTTTGGGCTGCCGGGACTGTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 642 54.83 MDIFPSFYEELSSSESSNCRRAIFSDEEVMLAACNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASADARDIQKAAAAAAEAFRQVESDGSSVDDSRAENGMTVETAATEPENVFYMDEEAVFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1783972 1784613 + Maker00002955 Lcy6g0195 634639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0195 213 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677(InterPro)
Lcy6g0195 213 Pfam AP2 domain 51 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Lcy6g0195 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0195 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 213 IPR045277 GO:0003700(InterPro)
Lcy6g0195 213 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1080 Lcy-Chr12:19290110 Lcy6g0195 Lcy-Chr6:1783972 3.80E-84 dispersed
Lcy12g1704 Lcy-Chr12:37543431 Lcy6g0195 Lcy-Chr6:1783972 2.48E-61 dispersed
Lcy5g0381 Lcy-Chr5:3871566 Lcy6g0195 Lcy-Chr6:1783972 3.88E-37 dispersed
Lcy6g0195 Lcy-Chr6:1783972 Lcy6g1927 Lcy-Chr6:40315238 9.87E-40 dispersed
Lcy6g0194 Lcy-Chr6:1772564 Lcy6g0195 Lcy-Chr6:1783972 2.02E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20223 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0195 - - - 0.0