Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0205 ATGTTTGAGACAATGGCGAAAAATGCAACAGTCTTGTTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGACAGCAATTATTACTCAAAAACATGTCCCAATGCTGAGAAAATCATCCTCCAAACTGTCTACAATGCTTCCATTCATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGACTGTTTCATAAGGGGATGCGATGCGTCGGTGCTAATAGATTCAACGCCAGGGAATCAGGCAGAGAAAGATGCACCTCCGAACATCTCGTTAAGGTCATTCTATGTGATCGATGATGCTAAAGCCAAGCTTGAGAGTGCATGTCCACATACTGTTTCTTGTGCTGATATTGTCGCCATTTCTGCTAGAGATGTAGTAACTCTGTCTGGGGGCCCATATTGGAGTGTACTCAAAGGCAGGAAAGATGGGAAGATTTCCAATGCTTCTGAAACCATCAACTTGCCAGCACCAACTTTCAATGTGTCTCAACTCATCCAAAGCTTTGCAAACAGAGGATTACAAGTTAAAGACTTGGTTGCTCTATCTGGAGCTCACACTCTTGGATTCTCACACTGTTCTTCCTTCCAATCCAGACTCCGCAACTTCAGCTCAATTCATGAAACTGATCCAACTTTGGAATCTGGGTTTGCCCAGATTCTGAAAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCAGGACAGGTCTTGGACCCAACTTCCTCGACTTTTGACAATGTGTACTACAAAAGACTGTTGGAAGGAAAGGGTGTGTTTGGTTCAGATCAATCTCTGTTTGGTGATTCTAGAACTAAATGGATTGTTGGGTCGTTTGCTAAAGATCAGAACTTGTTCTTTAAGGAGTTTGCAGCTTCAATGGTGAAATTGGGAAATGTTGGGGTTAGTGAAAATGGCAATGTCAGACTCAATTGCAGGGTGGTGATCTGA 963 42.78 MFETMAKNATVLFLMMMVCLSEGVLDSNYYSKTCPNAEKIILQTVYNASIHDPKVPARLLRLFFHDCFIRGCDASVLIDSTPGNQAEKDAPPNISLRSFYVIDDAKAKLESACPHTVSCADIVAISARDVVTLSGGPYWSVLKGRKDGKISNASETINLPAPTFNVSQLIQSFANRGLQVKDLVALSGAHTLGFSHCSSFQSRLRNFSSIHETDPTLESGFAQILKNKCPKPNLDKNAGQVLDPTSSTFDNVYYKRLLEGKGVFGSDQSLFGDSRTKWIVGSFAKDQNLFFKEFAASMVKLGNVGVSENGNVRLNCRVVI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1839494 1841265 + Maker00002374 Lcy6g0205 634649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0205 320 Pfam Peroxidase 44 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lcy6g0205 320 ProSiteProfiles Plant heme peroxidase family profile. 24 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 Gene3D - 28 319 - -
Lcy6g0205 320 FunFam Peroxidase 28 168 - -
Lcy6g0205 320 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy6g0205 320 Gene3D Peroxidase, domain 2 160 301 - -
Lcy6g0205 320 FunFam Peroxidase 160 301 - -
Lcy6g0205 320 SUPERFAMILY Heme-dependent peroxidases 25 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PANTHER PEROXIDASE 25-RELATED 18 316 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy6g0205 320 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0597 Lcy-Chr1:5097384 Lcy6g0205 Lcy-Chr6:1839494 4.58E-108 dispersed
Lcy1g2770 Lcy-Chr1:55188595 Lcy6g0205 Lcy-Chr6:1839494 1.11E-76 dispersed
Lcy5g1849 Lcy-Chr5:41319113 Lcy6g0205 Lcy-Chr6:1839494 1.89E-77 dispersed
Lcy6g0205 Lcy-Chr6:1839494 Lcy8g1452 Lcy-Chr8:41193682 4.60E-88 dispersed
Lcy6g0205 Lcy-Chr6:1839494 Lcy13g1893 Lcy-Chr13:37882265 6.84E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0205 K00430 - csv:101210306 574.318