Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0207 | GAGGAAGACGTGGCCTGCAAAACAGAAATCCTGCACACCGGTGTGGTGCTTGCCACACCACCTCTGATGCTTAAGTCAGTAGCAGAACGATGGGAAGCAAGAAAGGTTTTTAGGAATTCGGAGGCGTTTCGGGACAAATCAAGCGGAACCGGGGCGGCCAGAGGCAATAGGGATCAAACAGAGGCTACCGGGCTCAGCCTCTGCCCATGGCCGAGGCCGAAAGCCCGACCCCTTCGGTCTTGGCCCGACCTATTGGCTCGTTTCGCCTCTGGAGTCCATCTTCCAGTCCTATTTCTGTCCGGTTGTCCTTGTCAGCTCCTTAAAATGGTGAGAGGAAAAGTAGAAATGAAACGAATAGAAAATGCGACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCGTATGAACTGTCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCTCAGAAAGGCCGTCTCTATGAGTTTGCAAGCTCTGAAATGCCTAGGATTGTAGAACGATATCGCAAATGTGCAAGAGAAGGGAGGAACAATAGCAAATTTGATAGACAACTCCAATTACAGCAATTAAGGGTTGAAGCCGAAAGCATTAATGAGAAGATCGAGTTGATTCAAGTTTCTCAACGAAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCAATTACTCGATGCTCAGCTTCAGCAAAGCTTGTTCCAAATTAGGGCCAGAAAGGTTCAGCTATTCAAGGAACAAATACAACAACTAGAGGAGAAGGAAAAATTCCTTTTAGAAGAGAACAGAAAATTGTCTTTAAAGGCCGAAGCTCATGGTGGCGCCGCCGCTCCCGGCTGCCGGAGGACCTCAAGTTGGGCAGTCGACACCCAGTTGTCCATTTGA | 918 | 47.71 | EEDVACKTEILHTGVVLATPPLMLKSVAERWEARKVFRNSEAFRDKSSGTGAARGNRDQTEATGLSLCPWPRPKARPLRSWPDLLARFASGVHLPVLFLSGCPCQLLKMVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCAREGRNNSKFDRQLQLQQLRVEAESINEKIELIQVSQRKLLGYGLDSCSLDELQLLDAQLQQSLFQIRARKVQLFKEQIQQLEEKEKFLLEENRKLSLKAEAHGGAAAPGCRRTSSWAVDTQLSI | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1858196 | 1867661 | + | Maker00002596 | Lcy6g0207 | 634651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0207 | 305 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 109 | 280 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy6g0207 | 305 | FunFam | MADS-box transcription factor MADS-MC | 121 | 193 | - | - | |
Lcy6g0207 | 305 | CDD | MADS_MEF2_like | 111 | 180 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lcy6g0207 | 305 | ProSiteProfiles | K-box domain profile. | 196 | 286 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy6g0207 | 305 | MobiDBLite | consensus disorder prediction | 45 | 66 | - | - | |
Lcy6g0207 | 305 | Coils | Coil | 252 | 279 | - | - | |
Lcy6g0207 | 305 | Gene3D | - | 122 | 200 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | ProSiteProfiles | MADS-box domain profile. | 109 | 169 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | PRINTS | MADS domain signature | 111 | 131 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | PRINTS | MADS domain signature | 131 | 146 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | PRINTS | MADS domain signature | 146 | 167 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 118 | 165 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | ProSitePatterns | MADS-box domain signature. | 111 | 165 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | SMART | madsneu2 | 109 | 168 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | SUPERFAMILY | SRF-like | 111 | 196 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0207 | 305 | Pfam | K-box region | 194 | 279 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy6g0207 | 305 | Coils | Coil | 196 | 216 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1174 | Lcy-Chr12:23055012 | Lcy6g0207 | Lcy-Chr6:1858196 | 7.04E-33 | dispersed | |
Lcy13g0612 | Lcy-Chr13:8032163 | Lcy6g0207 | Lcy-Chr6:1858196 | 1.92E-52 | dispersed | |
Lcy6g0207 | Lcy-Chr6:1858196 | Lcy6g0403 | Lcy-Chr6:3814021 | 6.75E-35 | dispersed | |
Lcy6g0207 | Lcy-Chr6:1858196 | Lcy6g0210 | Lcy-Chr6:1886860 | 1.52E-37 | proximal | |
Lcy11g1921 | Lcy-Chr11:42931674 | Lcy6g0207 | Lcy-Chr6:1858196 | 5.33E-44 | wgd | |
Lcy12g1715 | Lcy-Chr12:37696684 | Lcy6g0207 | Lcy-Chr6:1858196 | 5.51E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20225 | None | None | None | None | Lcy | TF |
Pathway information
