Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0207 GAGGAAGACGTGGCCTGCAAAACAGAAATCCTGCACACCGGTGTGGTGCTTGCCACACCACCTCTGATGCTTAAGTCAGTAGCAGAACGATGGGAAGCAAGAAAGGTTTTTAGGAATTCGGAGGCGTTTCGGGACAAATCAAGCGGAACCGGGGCGGCCAGAGGCAATAGGGATCAAACAGAGGCTACCGGGCTCAGCCTCTGCCCATGGCCGAGGCCGAAAGCCCGACCCCTTCGGTCTTGGCCCGACCTATTGGCTCGTTTCGCCTCTGGAGTCCATCTTCCAGTCCTATTTCTGTCCGGTTGTCCTTGTCAGCTCCTTAAAATGGTGAGAGGAAAAGTAGAAATGAAACGAATAGAAAATGCGACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCGTATGAACTGTCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCTCAGAAAGGCCGTCTCTATGAGTTTGCAAGCTCTGAAATGCCTAGGATTGTAGAACGATATCGCAAATGTGCAAGAGAAGGGAGGAACAATAGCAAATTTGATAGACAACTCCAATTACAGCAATTAAGGGTTGAAGCCGAAAGCATTAATGAGAAGATCGAGTTGATTCAAGTTTCTCAACGAAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCAATTACTCGATGCTCAGCTTCAGCAAAGCTTGTTCCAAATTAGGGCCAGAAAGGTTCAGCTATTCAAGGAACAAATACAACAACTAGAGGAGAAGGAAAAATTCCTTTTAGAAGAGAACAGAAAATTGTCTTTAAAGGCCGAAGCTCATGGTGGCGCCGCCGCTCCCGGCTGCCGGAGGACCTCAAGTTGGGCAGTCGACACCCAGTTGTCCATTTGA 918 47.71 EEDVACKTEILHTGVVLATPPLMLKSVAERWEARKVFRNSEAFRDKSSGTGAARGNRDQTEATGLSLCPWPRPKARPLRSWPDLLARFASGVHLPVLFLSGCPCQLLKMVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCAREGRNNSKFDRQLQLQQLRVEAESINEKIELIQVSQRKLLGYGLDSCSLDELQLLDAQLQQSLFQIRARKVQLFKEQIQQLEEKEKFLLEENRKLSLKAEAHGGAAAPGCRRTSSWAVDTQLSI 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1858196 1867661 + Maker00002596 Lcy6g0207 634651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0207 305 PANTHER SERUM RESPONSE FACTOR HOMOLOG 109 280 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0207 305 FunFam MADS-box transcription factor MADS-MC 121 193 - -
Lcy6g0207 305 CDD MADS_MEF2_like 111 180 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0207 305 ProSiteProfiles K-box domain profile. 196 286 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0207 305 MobiDBLite consensus disorder prediction 45 66 - -
Lcy6g0207 305 Coils Coil 252 279 - -
Lcy6g0207 305 Gene3D - 122 200 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 ProSiteProfiles MADS-box domain profile. 109 169 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 PRINTS MADS domain signature 111 131 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 PRINTS MADS domain signature 131 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 PRINTS MADS domain signature 146 167 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 118 165 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 ProSitePatterns MADS-box domain signature. 111 165 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 SMART madsneu2 109 168 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 SUPERFAMILY SRF-like 111 196 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0207 305 Pfam K-box region 194 279 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0207 305 Coils Coil 196 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1174 Lcy-Chr12:23055012 Lcy6g0207 Lcy-Chr6:1858196 7.04E-33 dispersed
Lcy13g0612 Lcy-Chr13:8032163 Lcy6g0207 Lcy-Chr6:1858196 1.92E-52 dispersed
Lcy6g0207 Lcy-Chr6:1858196 Lcy6g0403 Lcy-Chr6:3814021 6.75E-35 dispersed
Lcy6g0207 Lcy-Chr6:1858196 Lcy6g0210 Lcy-Chr6:1886860 1.52E-37 proximal
Lcy11g1921 Lcy-Chr11:42931674 Lcy6g0207 Lcy-Chr6:1858196 5.33E-44 wgd
Lcy12g1715 Lcy-Chr12:37696684 Lcy6g0207 Lcy-Chr6:1858196 5.51E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20225 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0207 - - - 0.0