Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0210 ATGGGAAGAGGAAAAGTTGTGCTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGACCTTCTCAAAGCGCAGAAATGGGTTATTGAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGTTGACGTTGCCCTCATAATCTTCTCTAGTCGTGGCAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAAAGGTACCACCAGCGATGTTACAGCTCTGGATCAAGCAGCAACCTTGACGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCGCATAGGAACTATCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCACAGTCTTGAGAAACAGTTGGACAAAACTCTTTCACAAACAAGACAACGGAAGGCTGAGATAATGCTTCAAAGATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATCAGAATACTCAGCTCAAGTCAAAGCTTGAAGAAGGACAACAATGTATGCAACAAAACGAAGATGGAGAAGGAGATCCAAACAAACAACTACTGAATTACGAAGTTGTGGCAGATCCAAACATGAACAGCAGGTACTTTGATGTCCAAGAAGAGGAAGAAGCCAGGGCCATGATAGGAGGGAGTAACCTAATCCCAGATTGGCTCCTATGA 690 44.06 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSSNLDESDIQIEEVSKLRAKYESLQRSHRNYLGEELEPLNLKELHSLEKQLDKTLSQTRQRKAEIMLQRLADLRKMEQDLGDQNTQLKSKLEEGQQCMQQNEDGEGDPNKQLLNYEVVADPNMNSRYFDVQEEEEARAMIGGSNLIPDWLL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1886860 1893043 - Maker00002571 Lcy6g0210 634654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0210 229 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0210 229 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lcy6g0210 229 Coils Coil 151 171 - -
Lcy6g0210 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 MobiDBLite consensus disorder prediction 167 185 - -
Lcy6g0210 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0210 229 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0210 229 Coils Coil 92 112 - -
Lcy6g0210 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0210 229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 MobiDBLite consensus disorder prediction 167 188 - -
Lcy6g0210 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0210 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2470 Lcy-Chr5:47435771 Lcy6g0210 Lcy-Chr6:1886860 2.77E-43 dispersed
Lcy5g2471 Lcy-Chr5:47447574 Lcy6g0210 Lcy-Chr6:1886860 5.56E-42 dispersed
Lcy6g0210 Lcy-Chr6:1886860 Lcy6g0403 Lcy-Chr6:3814021 3.04E-36 dispersed
Lcy6g0207 Lcy-Chr6:1858196 Lcy6g0210 Lcy-Chr6:1886860 1.52E-37 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20226 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0210 K09264 - csv:101212022 354.369