Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0218 CGAGGCCAACCATTTGGCCCGCTTGCGCGGACCGAGCCCGGTGGCCTCTTTTCGGTCCCTGATGCCCCGAATCGCCCCGGTTCCGCCTGGTTCGCCCCGAAACACCTCCGGATTCCTAAAAACCCTAGGAGGGCAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGACCTCTGTCCAGATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAGAGTGCTTGCCAGTCTAGACCGCGCATCGGTGGTGGTCTGCAGGATGGATCAAGTTCAGAAACCAAAAGGAAACCTCGGATATGAGCGGGAAACGACGAGCCCGACTGGGGCCGACCTCGGTAGGGAGAAGTCCGACCCTAACTTCAGAGCATTCCGTTACTTCCTTATATTACACTTCGCCGATGATGATTTTCCTCACCGAGAGATTCTCGTCGGCGTGTTCCTGCTTCGGAAGAATCCGATGACGGACGTTTACTGTAGAATGCCAAGCGAAGATGATGGAGATTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGGCGATTAGCAACAGTACCGTCGGCAAATCCCTCGTCCTCGACCAGTCACCACCGGAAGGACAATCAGACTGAGACTTCCGGTTTCGAGAAGAAGCTTGTTCGGAAGACGGACGGCGACGGTACTCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGACGTGAAGACTGTAGTGGCTTCACCGTCGGTACCTCAGCCGGTGTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGACGCAGTATCGGTGAGCACGTGGCTTCTTGGTCCAGAAAATTGCCGGCGGCTACCGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTAGTACGGGAGGAATTTTCGCGCGTGGTAGGTACGCGCCAAGAAACTGAGAGTGGCGGCGGAGGAAGCAGCACGGCGGATGAGGTTAAGGTGGAGGAGGAGGCGGTTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGATGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGTCAGTGTGGTTGCCATCCAATGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGTGACTCACGCGCCGTCCTCTGCCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAATTGATGAACTAGCAAGGATCGAAGCTGCTGGAGGACGGGTGATTTTTGTTAATGGAGCTCGGGTTGAAGGCATCCTTGCAATGTCCCGTGCAATAGGTAATAACTACTGCTTCTGTGAACTATGA 1500 56.6 RGQPFGPLARTEPGGLFSVPDAPNRPGSAWFAPKHLRIPKNPRRANRHRRRCGLHHAGVQRFLLVLQVTSSPVSTNSLLVSREGQVRPLSRFWHQQLAPSVGKRVLASLDRASVVVCRMDQVQKPKGNLGYERETTSPTGADLGREKSDPNFRAFRYFLILHFADDDFPHREILVGVFLLRKNPMTDVYCRMPSEDDGDSPAKCRERRRRRIEMRRLATVPSANPSSSTSHHRKDNQTETSGFEKKLVRKTDGDGTPEISSSSSSGEDVKTVVASPSVPQPVFGMMSVSGRSREMEDAVSVSTWLLGPENCRRLPVHFFAVYDGHGGPHVAALCREKMHVLVREEFSRVVGTRQETESGGGGSSTADEVKVEEEAVWRRVMRRSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRIDELARIEAAGGRVIFVNGARVEGILAMSRAIGNNYCFCEL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1986861 1993931 - Maker00002633 Lcy6g0218 634662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0218 499 ProSitePatterns PPM-type phosphatase domain signature. 318 326 IPR000222 GO:0043169(InterPro)
Lcy6g0218 499 PANTHER PROTEIN PHOSPHATASE 235 494 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy6g0218 499 MobiDBLite consensus disorder prediction 232 253 - -
Lcy6g0218 499 Gene3D - 278 496 IPR036457 -
Lcy6g0218 499 Pfam Protein phosphatase 2C 283 494 IPR001932 -
Lcy6g0218 499 MobiDBLite consensus disorder prediction 255 271 - -
Lcy6g0218 499 CDD PP2Cc 282 491 IPR001932 -
Lcy6g0218 499 SMART PP2C_4 272 499 IPR001932 -
Lcy6g0218 499 SUPERFAMILY PP2C-like 277 496 IPR036457 -
Lcy6g0218 499 ProSiteProfiles PPM-type phosphatase domain profile. 282 499 IPR001932 -
Lcy6g0218 499 MobiDBLite consensus disorder prediction 212 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0990 Lcy-Chr10:31810923 Lcy6g0218 Lcy-Chr6:1986861 9.11E-49 dispersed
Lcy3g1635 Lcy-Chr3:43570860 Lcy6g0218 Lcy-Chr6:1986861 8.04E-45 dispersed
Lcy6g0081 Lcy-Chr6:773112 Lcy6g0218 Lcy-Chr6:1986861 8.32E-44 dispersed
Lcy6g0218 Lcy-Chr6:1986861 Lcy8g0735 Lcy-Chr8:27064303 1.95E-44 dispersed
Lcy9g1989 Lcy-Chr9:44765427 Lcy6g0218 Lcy-Chr6:1986861 4.63E-08 dispersed
Lcy12g0563 Lcy-Chr12:6861616 Lcy6g0218 Lcy-Chr6:1986861 5.09E-38 transposed
Lcy11g1906 Lcy-Chr11:42770722 Lcy6g0218 Lcy-Chr6:1986861 1.37E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0218 K14497 - csv:101206634 516.538