Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0219 ATGGCTGATTCTCTTGTGAAATGGCTCTGTTTGCTTCTGTTTCTTCACTGTTTGCTTCTTTCAAGAGCTCAGTTTTTGAAAACTTATGTCGTTCAAATGGACAGGTCTGCAATGCCGGCCTCATTCTCGGATCATTTTCAGTGGTACTCCACAGTTCTAAGCAATGTGGTGGTTAGCCCTGAGAGAGAAGGTAATGGGGGAGGTGAAGAGAGGATCATTTACAGTTACCAGAGTGTTTTCCATGGAGTTGCAGCTCGGTTGAGTGAAGAAGAGGCTGAGAGGCTCGAGGAAGAAGATGGGGTGTTGGCCATTTTTCCGGAGACTAAGTATGAGCTTCATACAACGAGAAGCCCCAAGTTTCTTGGGCTTGAACCGGCTGACAGCAACAGCGCCTGGTCTCAGCAGATTGCAGACCATGACGTGATCGTTGGAGTTTTGGATACTGGGATTTGGCCGGAGAGTGAGAGCTTCAACGACGCTGGAATGTCGCCGGTGCCGCCGCATTGGAAAGGGGAATGTGAAACAGGGCGAGGCTTTACGAAACAGAATTGTAATAGAAAGATCGTCGGCGCCAGAGTGTTCTACCATGGGTATGAAGCTGCGACTGGGAAATTTAACGAACAGTTGGAGTACAAATCGCCGAGGGATCAAGATGGGCATGGAACTCACACGGCGGCCACCGTCGCCGGCTCTCCGGTGGCCGGCGCGAGCCTCCTTGGTTATGCTTATGGAACGGCCAGAGGAATGGCGCCCGGTGCAAGAATTGCCGCCTACAAAGTCTGTTGGGTCGGCGGCTGCTTTAGCTCCGACATTTTGTCGGCTGTGGATAGAGCTGTGGCCGACGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGCCTTTCAGTTGCAGCATTTGGGGCAATGGAGATGGGCGTGTTTGTATCCTGCTCGGCCGGAAATGGAGGGCCGGACCCTGTCAGTCTCACAAACGTATCGCCATGGATAACCACCGTCGGCGCCAGTACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGTGATGGCAGAACAGTCACCGGCGTTTCACTTTACAGAGGAAGAATCACAATTCCGGAAAACAAGCAATTCCCAGTTGTGTACATGGGGAGTAATTCGAGCAGCCCTGATCCGAGCTCGCTCTGTTTGGAAGGAACTTTAGATCCCCATTTCGTGGCCGGAAAAATTGTGATATGCGATCGAGGAATTAGCCCTCGGGTCCAGAAGGGTGTGGTGGTGAAAAATGCAGGTGGGATTGGGATGATTCTGTCTAACACGGCGGCGAATGGGGAAGAACTCGTTGCCGATTGCCATTTGGTACCAGCTGTCGCCGTCGGAGAAAAAGAAGGCAAAGCAATTAAACAATACGCATTAACGAATCGAAAAGCAACGGCGACTCTAGGGTTCTTGGGGACAAGATTGGGGGTTAAACCCTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTCGAAATCCTCAAGCCCGATCTAGTGGCTCCCGGCGTCAACATCCTCGCCGCTTGGACCGGAAAAACAGGGCCGTCGAGCTTGACGACGGACACCAGAAGGGTCAAATTCAACATTCTTTCAGGAACTTCAATGTCGTGCCCTCACGTTAGTGGCGTAGCGGCTCTGATCAAATCAAAGCATCCCGATTGGAGCCCGTCGGCAATCAAATCGGCGCTGATGACCACCGCTTACGTCCACGACAACACCTACAAGCCTCTCAGAGACTCCTCAGCCGCATCGCCGTCGAGTCCGTACGACCATGGCGCCGGCCACATAAACCCAAGAAAAGCCCTAGATCCTGGTTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGAATTCCTCTGTACACAGGATTTAACCCCATCGCAACTCAAAGTCTTCTCCAAGAATTCAAACAGAACGTGCCATCGCCTTCTCCCCAACCCCGGAGATTTGAATTACCCGGCCATCTCCGCCGTTTTCCCAGAGAAAACCTCCGTCACTTCCCTGACCCTTCACAGAACCGTCACCAACGTCGGCCCAGCAGCCTCCAGTTACCGTGCAGTGGTGACGCTGTTCAACGGCGCCGCCGTGAAAGTCGAGCCGGAGAGTCTGAACTTCACGAGGAGATATCAGAAGCTCTCTTACAGAATCACTTTTCTGTCGAAGAAGAGACAGAGTATGCCGGAATTCGGAGGGCTGATTTGGAAGGATGGAAGTCACAAAGTGAGAAGCCCCATTGTCATCACTTGGTTGTCGTTTGTTTGA 2319 52.09 MADSLVKWLCLLLFLHCLLLSRAQFLKTYVVQMDRSAMPASFSDHFQWYSTVLSNVVVSPEREGNGGGEERIIYSYQSVFHGVAARLSEEEAERLEEEDGVLAIFPETKYELHTTRSPKFLGLEPADSNSAWSQQIADHDVIVGVLDTGIWPESESFNDAGMSPVPPHWKGECETGRGFTKQNCNRKIVGARVFYHGYEAATGKFNEQLEYKSPRDQDGHGTHTAATVAGSPVAGASLLGYAYGTARGMAPGARIAAYKVCWVGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGDGRTVTGVSLYRGRITIPENKQFPVVYMGSNSSSPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGIGMILSNTAANGEELVADCHLVPAVAVGEKEGKAIKQYALTNRKATATLGFLGTRLGVKPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLRDSSAASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFEFLCTQDLTPSQLKVFSKNSNRTCHRLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPAASSYRAVVTLFNGAAVKVEPESLNFTRRYQKLSYRITFLSKKRQSMPEFGGLIWKDGSHKVRSPIVITWLSFV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2004756 2007074 - Maker00002787 Lcy6g0219 634663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0219 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Lcy6g0219 772 Gene3D - 346 490 - -
Lcy6g0219 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 765 IPR045051 -
Lcy6g0219 772 Pfam PA domain 380 468 IPR003137 -
Lcy6g0219 772 Pfam Subtilase family 139 594 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0219 772 ProSiteProfiles Serine proteases, subtilase domain profile. 109 621 - -
Lcy6g0219 772 CDD Peptidases_S8_3 110 587 IPR034197 -
Lcy6g0219 772 FunFam Subtilisin-like protease SBT1.9 18 113 - -
Lcy6g0219 772 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Lcy6g0219 772 PRINTS Subtilisin serine protease family (S8) signature 550 566 IPR015500 -
Lcy6g0219 772 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Lcy6g0219 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 113 IPR037045 -
Lcy6g0219 772 Pfam Fibronectin type-III domain 668 766 IPR041469 -
Lcy6g0219 772 Gene3D Peptidase S8/S53 domain 140 634 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0219 772 FunFam subtilisin-like protease SBT1.5 346 489 - -
Lcy6g0219 772 SUPERFAMILY Subtilisin-like 112 625 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0219 772 Gene3D - 638 769 - -
Lcy6g0219 772 CDD PA_subtilisin_like 353 482 - -
Lcy6g0219 772 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
Lcy6g0219 772 FunFam Subtilisin-like protease SBT1.5 140 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2125 Lcy-Chr13:40144800 Lcy6g0219 Lcy-Chr6:2004756 8.25E-273 dispersed
Lcy2g0978 Lcy-Chr2:9124001 Lcy6g0219 Lcy-Chr6:2004756 5.55E-273 dispersed
Lcy6g0219 Lcy-Chr6:2004756 Lcy8g1248 Lcy-Chr8:39042713 6.94E-256 dispersed
Lcy3g2276 Lcy-Chr3:49588054 Lcy6g0219 Lcy-Chr6:2004756 2.55E-256 transposed
Lcy12g1726 Lcy-Chr12:37985057 Lcy6g0219 Lcy-Chr6:2004756 5.02E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0219 - - - 0.0