Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0227 ATGGTTTATCGATTCCTCATGGCGAGAAGAGGAGGAGCAATTGGATCATGGCTTTGCACCGTTATGGTTTTAATTTCTGCGCAAATTCATGTCTCAGCCCGATCGGATAAGGAAATTAGGGAAAGATTTTATGGAAACTTGATCAACTCAACGGCTCCGACTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTCTCTGACAATGATCTGCCCGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGTGTTGCTGATCAGGAGGCAGAACTGGAGACAGTAGCTAAAATCACACATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAAGTATGGAACTAAAACACTTCTGTTATTGGACAGTGGGACAAGAGCATTCCAATTTCAGGATGTTTTCTCTCTGGAAAATGAAGAATCTGATGACGTTACAACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATTTCAGACTTGGTGGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTCTTGGGCAACCAGTAATTGTGGGCTATCTTCTTGCTGGATCAATCATTGGACCGGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACTGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGCTAAAAGTTGTGGGAGCTGTGGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTGTGTGGTATCATTGCCATGTTAAGTGGAGCTAAATTGTCCGAGGGTGTATTTGTTGGTTCATTTCTATCAATGTCATCGACAGCAGTGGTGGTGAAGTTCTTAGTAGAACGGAATAGTAGTAATACTCTTCATGGTCAAGTTACTATTGGAACACTTATCTTACAGGATTGTGCCGTTGGTTTGTTATTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTCTTTTAGGAATGATATCTATGGGAAAGTTGCTACTTGTGTTGTCTGTATATCTCACAGCCGCATCTTTTTTGTCATGGTCATTTGTTCCTCGCTTTCTTAAGTTGATGATGCAGCTGTCTTCTCAAACAAATGAGTTGTATCAACTTGCTGCTGTGGCATTCTGCTTGCTGTCTGCTTGGTGCAGTGATAAGTTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCGGGAGTTATGATATCTACCACTGACTTCGGTCAACATACTTTAGATCAGGTGGAACCAATCCGCAATTTATTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGACATTTTGCTGGCATCTGTAATGCTGGTTGTGTTTGTTAAGACAGCAGTTGCTACCGTTGTTGCAAAGGCATTTGGATACAGTATTAGGACTTCTTTTCAGGTTGGGGTCATGCTTGCTCAAATTGGAGAATTTGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGGTTACCTCTCTCTCTATCTATCTGACTGACACACACACAGACAAAATAGGACATTTTTAG 1647 41.11 MVYRFLMARRGGAIGSWLCTVMVLISAQIHVSARSDKEIRERFYGNLINSTAPTSGDGSIAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEAELETVAKITHEKGKKNDSQKAKYGTKTLLLLDSGTRAFQFQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLLLGMISMGKLLLVLSVYLTAASFLSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVATVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGVTSLSIYLTDTHTDKIGHF 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2049188 2057447 + Maker00002967 Lcy6g0227 634671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0227 548 Pfam Sodium/hydrogen exchanger family 186 529 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy6g0227 548 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 18 530 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Lcy6g0227 548 Gene3D - 176 538 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1953 Lcy-Chr11:43173678 Lcy6g0227 Lcy-Chr6:2049188 2.28E-36 dispersed
Lcy13g2181 Lcy-Chr13:40751237 Lcy6g0227 Lcy-Chr6:2049188 2.59E-139 dispersed
Lcy13g2183 Lcy-Chr13:40764399 Lcy6g0227 Lcy-Chr6:2049188 1.01E-48 dispersed
Lcy4g0123 Lcy-Chr4:1627379 Lcy6g0227 Lcy-Chr6:2049188 3.09E-20 dispersed
Lcy6g0227 Lcy-Chr6:2049188 Lcy6g0832 Lcy-Chr6:8361677 1.77E-09 dispersed
Lcy6g0227 Lcy-Chr6:2049188 Lcy2g0907 Lcy-Chr2:8317292 1.91E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0227 K26735 - csv:101207607 907.901