Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0237 ATGCACGTGGCCAGTGGAAGCCATTTCCATGGCTTCCATCATCGCAATGATGAAGAAATTGATGCTGGTTCTCAACTGTTGCGTTATCGTGTTATTGCCATGGTTCTGGAACTAGGAATTGTAGTTCATTCCGTTGTGATTGGACTTTCACTTGGGACTGCGAATGATACCTGCACAATCAAAGGTCTAGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGCCTCGGTGGCTGCATTCTCCAGGCTGAGTATAAGTGGATGAAGGCGGCAATAATGGCTTTCTTCTTCTCCGTGACAACCCCATTTGGGATTGCACTTGGGATAGGATTGTCAAAGACCTACAAAGAGAACAGTCCGAGTGCATTGATCACTGCAGGATTATTGAATGCATCGTCAGCTGGTCTTCTAATCTACATGGCTCTGGTGGATCTTCTTTCTGCAGATTTCATGGGACCAAAGTTGCAGGGCAATATCAAACTCCAAATCAAATGCTACATTGCTGTACTATTAGGAGTTGGTGGCATGTCTTTGATGGCTAAGTGGGTTTGA 558 45.16 MHVASGSHFHGFHHRNDEEIDAGSQLLRYRVIAMVLELGIVVHSVVIGLSLGTANDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKAAIMAFFFSVTTPFGIALGIGLSKTYKENSPSALITAGLLNASSAGLLIYMALVDLLSADFMGPKLQGNIKLQIKCYIAVLLGVGGMSLMAKWV 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2103732 2104500 + Maker00002700 Lcy6g0237 634681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0237 185 PANTHER ZINC/IRON TRANSPORTER 18 184 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Lcy6g0237 185 Pfam ZIP Zinc transporter 14 182 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy6g0237 185 NCBIfam ZIP zinc/iron transport family 7 184 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1554 Lcy-Chr5:36872847 Lcy6g0237 Lcy-Chr6:2103732 3.04E-113 dispersed
Lcy6g0237 Lcy-Chr6:2103732 Lcy9g1445 Lcy-Chr9:39486126 2.06E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0237 K14709 - csv:101221552 317.775