Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0240 ATGGAGGAGAAGGAAGCCGGAGTTTCTAGGTTTACAGTTACTAACGATGAAGCCCTAGAGAGCTTCCAGTTAGCTCCAAGAACAGAAACCCTAAAACCAACCGATGAGCCTAAAGTGACGGCGGATGCTGCACCGCCGGCGAGCCTGACGGCTGCTGCACCACCTTCGAGCGCTGCGGCGAATGATACACCACTGGCGAGCGCGGCGGTTTCCAGTACGGAAACTAAAAAGAAGAGAGGGAGGCCGAGAAAGTACGGTCCGGACGGGAAGCGCTCACTGACTCTGGCGCTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTTCCGAACTGGAAACGAGATAACGAGATGTCTCTAGCGATAGTCAAGAAGCCACAGAGATTCGAGTTCGAGAATCCCGGTCAGAGACTTGCATATTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACTGGATCGTTTATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCACTAGCAGGTCAAGATGGACGAGTCGTTGGAGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTAGGACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGCTTGTTTCCGCAGATCATTGGATTTTAG 846 49.88 MEEKEAGVSRFTVTNDEALESFQLAPRTETLKPTDEPKVTADAAPPASLTAAAPPSSAAANDTPLASAAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEMSLAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSFMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVGQISLSLSLSLSHSLFPQIIGF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2114577 2118788 + Maker00002534 Lcy6g0240 634684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0240 281 MobiDBLite consensus disorder prediction 19 93 - -
Lcy6g0240 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 259 - -
Lcy6g0240 281 Gene3D - 151 270 - -
Lcy6g0240 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 259 IPR039605 GO:0003680(InterPro)
Lcy6g0240 281 CDD DUF296 150 259 IPR005175 -
Lcy6g0240 281 ProSiteProfiles PPC domain profile profile. 146 281 IPR005175 -
Lcy6g0240 281 MobiDBLite consensus disorder prediction 54 73 - -
Lcy6g0240 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 259 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0240 Lcy-Chr6:2114577 Lcy9g0896 Lcy-Chr9:30102688 1.11E-90 dispersed
Lcy11g1898 Lcy-Chr11:42676493 Lcy6g0240 Lcy-Chr6:2114577 6.73E-77 wgd
Lcy12g1748 Lcy-Chr12:38272087 Lcy6g0240 Lcy-Chr6:2114577 1.42E-67 wgd
Lcy13g0601 Lcy-Chr13:7835251 Lcy6g0240 Lcy-Chr6:2114577 5.98E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0240 - - - 0.0