Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0259 ATGGATTCACAAAACAAAATTTCAATTTTTTCCATAACCCTTTTGGCAATTCTTTCAAATGTCTCTTCACAAACAGAATCCAGCACTGGCAATGGCAATGGCATTAACAAATGGTGCAAAACGACGCCGCATCCAGATGTTTGCATTCTCTTCATGTCACCGATCAAATCCCCACCCGAAAACCGACCGGAGTTTCGAAAAATGGCCATAAAAACCGCCATGGAAAAGACCGCCGAGGCTCAAACTTACGCGGCCCGGTTCGGTCCGAGCTGCAAGACCACCCGCCAGAGAGCCGCGTGGGCCGACTGCTTGAAGCTCTACAACGACGCCGTTTTTCAACTGAACCGCACCCTCCAAGGCCTCGCCGGCGGAACCCGCGGCCGCCGACGATGTACGGACTTCGATGCACAAACGTGGCTGAGTTCTGCGCTCACTAACATCGACATGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGAATTTATAACTCCGATCAGCTGCCAGAAAGTTTCGAAGATGATTAGCAATTGTTTGGCGATTAATGGGCGGTTTTTAGAGGAAGGGGTTAAAAGTGGAACCATGGGAGTGGAAAATCAGACTGGGTTTCCGAGATGGATTTCGAGTGGTGATGGGAAATTGTTGCAGGCGGCGAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAATTTCCGGTCGGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGGAGGAGGGGCCGATTTGTAATTTACGTAAAGCGAGGGGTTTACAGAGAGAATATTGAAGTTGGAACTAATAATGGGAATTTAATGCTGGTCGGAGATGGGATGAGATTTACAGTGATTACGAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCGGGTATCCAAGGGCCAGCTTTCATAGCACGAGACATAGCCTTTGTGAACACGGCTGGTCCTCGGATGGGCCAAGCCGTGGCGCTCCGGTCATCGTCAGACCTATCGGTGTTCCACCGGTGCAGCTTTCAAGGCTACCAAGACACTCTACTAGTGCTATCCCAGAGACAATTCTACAAGCAATGTTACATCTACGGTACAATCGACTTCATTTTCGGCAACGCCGCAGTCGTTTTACAAAACTGCTTGATTTACGTACGAAGGCCTTTAAAGGGCCAAGTCAACGTCGTCACGGCCCAAGGCCGAGAGGACCCATTTCAGAACAGCGGAATCTCGATCCACAACTCTCAAATACGGGCCGCCGCCGATTTGCGGCCCATTATTGGGTCGGTCAAAACTTATTTGGGCCGGCCCTGGAAGAAGTATTCGCGGACCGTGATCATGAGGAGTTATATTGACAGGTTGGTCAGCCCAGTGGGCTGGTTGGCGTGGCAAAATAGTAAATTTGCTCAAAATACGTTGTATTATGGGGAGTATAAGAATTTTGGGCCTAGGGCTTCGACCCGGTTTAGAGTGAGATGGCCCGGTTTTCATGCTATTAAAAACCCAAATGTGGCCGCTAAGTTTACCGTTAGGAGACTCATCGCCGGCCAGACTTGGCTGCCGGCCACCGGAGTTCCGTTCAAGCTTGGCCTTTGA 1611 51.52 MDSQNKISIFSITLLAILSNVSSQTESSTGNGNGINKWCKTTPHPDVCILFMSPIKSPPENRPEFRKMAIKTAMEKTAEAQTYAARFGPSCKTTRQRAAWADCLKLYNDAVFQLNRTLQGLAGGTRGRRRCTDFDAQTWLSSALTNIDMCLSGAADLNVTEFITPISCQKVSKMISNCLAINGRFLEEGVKSGTMGVENQTGFPRWISSGDGKLLQAAKVRANLVVAKDGSGNFRSVQAAINAAARRRRRGRFVIYVKRGVYRENIEVGTNNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPAFIARDIAFVNTAGPRMGQAVALRSSSDLSVFHRCSFQGYQDTLLVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVVTAQGREDPFQNSGISIHNSQIRAAADLRPIIGSVKTYLGRPWKKYSRTVIMRSYIDRLVSPVGWLAWQNSKFAQNTLYYGEYKNFGPRASTRFRVRWPGFHAIKNPNVAAKFTVRRLIAGQTWLPATGVPFKLGL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2255102 2257479 + Maker00002953 Lcy6g0259 634703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0259 536 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Lcy6g0259 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 185 IPR035513 -
Lcy6g0259 536 Gene3D - 217 536 IPR012334 -
Lcy6g0259 536 CDD PMEI-like_3 38 185 - -
Lcy6g0259 536 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857(InterPro)
Lcy6g0259 536 SMART PMEI_2 30 181 IPR006501 GO:0004857(InterPro)
Lcy6g0259 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g0259 536 SUPERFAMILY Pectin lyase-like 220 535 IPR011050 -
Lcy6g0259 536 FunFam Pectinesterase 217 536 - -
Lcy6g0259 536 PANTHER PECTINESTERASE 9 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy6g0259 536 NCBIfam pectinesterase inhibitor domain 8 182 IPR006501 GO:0004857(InterPro)
Lcy6g0259 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0259 Lcy-Chr6:2255102 Lcy6g2382 Lcy-Chr6:48596680 2.39E-117 dispersed
Lcy6g0259 Lcy-Chr6:2255102 Lcy6g0260 Lcy-Chr6:2261062 1.62E-204 tandem
Lcy11g1878 Lcy-Chr11:42510268 Lcy6g0259 Lcy-Chr6:2255102 9.05E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0259 K01051 - csv:101213944 821.231