Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0260 ATGGAGAGGAGTCTTGGGGTGTTGTTGTTTCTTCAGTTCTTTTTACTGTCTTCTTCTGCCTTTTCCAAGCATGCCTCTAATGGCATTGATTGGTGGTGCAGAAAAACCACATACCCTGAGACCTGCAAGTATTTCTTCAACAATGGCAGCAAGGCTGTCCCCAAAGATATGCCTGAATTCAAGAAAATGGTGATTCAGTTCGCCATGGAGAGAGCTCTTACTGCCGAGACCCACACTAAGGGTGTGGGTTGGAAGTGCCGAAATGAGAAGGAAAAGGCTGCTTGGGCTGATTGCTTGAAGCTCTACCAAAACACCATCTTTCAGCTCAACCACACTCTGGATTCCTCTACAAAATGTACTGAATTTGATATCCAAACCTGGCTCAGTACCGCCCTAACCAACCTTGAAACATGCCGCACCGGGTTTGCTGAGCTTAATGTTTCAGACTATGTATTGCCGCTGATCACGTCGAACAATGTCACGAAGCTGATAAGTAACAGCTTGGCGGTGAACAATGCTTCAGCTTGGCCAGGGAAAGAGACATATAAAGGGGTTTTTCCAACTTGGCTTTCTGGTGGTGACAGGAGGCTACTGCAGTCATCTTCACTGAAGGCGGACCTTGTGGTGGCTAAGGACGGATCCGGTAACCATACGACCATTGGAGCGGCTCTAGTGGAAGCTGCAAAAAGAAAGACAGATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACCTCGAGATAGGAAGTAAGATGAAGAATATAATGCTCGTTGGAGATGGAATGAGGTTTACCATCATTACTGGCAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGAGAAGGATTTATAGCTCGAGGCATCACATTCCGTAACACTGCTGGTCCTGAAAACCACCAAGCCGTTGCTCTCCGATCTGGTGCAGATCTTTCTGTCTTCTACCGATGTGCCTTTGAAGGGTATCAGGACACCCTCTATGTCCATTCGCAAAGACAGTTCTATAAGGAGTGTTACATTTACGGCACGGTAGATTTCATATTTGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTACGCAAGGAGGCCAATGAGTGGTCAGAAAAATGCAGTCACTGCTCAAGGACGGACTGATCCAAATCAAAATACTGGCATTTCAATCCACAACTCACGAGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTAAAAACCTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTCGACAGTTTGGTTGATCCAGCAGGTTGGTTGGAGTGGAATGGTGACTTTGCACTGAATACTTTATATTATGGAGAGTATAAGAACATTGGTCCTCGTTCATCAACCAGCCAGAGAGTGAACTGGAAAGGTTACCGTGTTATAAGCAATTCAACTGAGGCATTGGAGTTCACCGTACAAAATTTCATCGCAGGGCAGTCATGGTTGCCAGGCACAGAGGTCCCATTTACTCCTGGACTCTAG 1557 45.79 MERSLGVLLFLQFFLLSSSAFSKHASNGIDWWCRKTTYPETCKYFFNNGSKAVPKDMPEFKKMVIQFAMERALTAETHTKGVGWKCRNEKEKAAWADCLKLYQNTIFQLNHTLDSSTKCTEFDIQTWLSTALTNLETCRTGFAELNVSDYVLPLITSNNVTKLISNSLAVNNASAWPGKETYKGVFPTWLSGGDRRLLQSSSLKADLVVAKDGSGNHTTIGAALVEAAKRKTDGRFVIQVKRGVYEENLEIGSKMKNIMLVGDGMRFTIITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMSGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYLDSLVDPAGWLEWNGDFALNTLYYGEYKNIGPRSSTSQRVNWKGYRVISNSTEALEFTVQNFIAGQSWLPGTEVPFTPGL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2261062 2262973 + Maker00002881 Lcy6g0260 634704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0260 518 Gene3D - 200 518 IPR012334 -
Lcy6g0260 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Lcy6g0260 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857(InterPro)
Lcy6g0260 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g0260 518 NCBIfam pectinesterase inhibitor domain 1 172 IPR006501 GO:0004857(InterPro)
Lcy6g0260 518 CDD PMEI-like_3 31 173 - -
Lcy6g0260 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Lcy6g0260 518 PANTHER PECTINESTERASE 14 508 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy6g0260 518 SMART PMEI_2 24 170 IPR006501 GO:0004857(InterPro)
Lcy6g0260 518 SMART complete 240 406 IPR006633 -
Lcy6g0260 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
Lcy6g0260 518 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Lcy6g0260 518 FunFam Pectinesterase 200 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1398 Lcy-Chr10:37454797 Lcy6g0260 Lcy-Chr6:2261062 3.78E-167 dispersed
Lcy11g1879 Lcy-Chr11:42529645 Lcy6g0260 Lcy-Chr6:2261062 3.17E-136 dispersed
Lcy12g1385 Lcy-Chr12:31097205 Lcy6g0260 Lcy-Chr6:2261062 2.86E-263 dispersed
Lcy1g0429 Lcy-Chr1:3790912 Lcy6g0260 Lcy-Chr6:2261062 2.84E-150 dispersed
Lcy3g2282 Lcy-Chr3:49654900 Lcy6g0260 Lcy-Chr6:2261062 8.43E-152 dispersed
Lcy5g1659 Lcy-Chr5:38789283 Lcy6g0260 Lcy-Chr6:2261062 9.20E-124 dispersed
Lcy6g0260 Lcy-Chr6:2261062 Lcy6g2382 Lcy-Chr6:48596680 4.78E-141 dispersed
Lcy6g0259 Lcy-Chr6:2255102 Lcy6g0260 Lcy-Chr6:2261062 1.62E-204 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0260 K01051 - csv:101211449 923.309