Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0287 CAATCGCACTCTTCAGTAGAAGAACAGAAGAGGGAAAGACAAAGAACTTCTTCCCGCCACAAAAACTCCATTCTCGTTCAGTTACAGATTAAGCTTCGGCATATTTCTTCTCACTCCAAAATCTTCATTCTTCTTCACCAGTACCAATCTTTCCACTTCCCCATTCCTCAAGGATTCGCGGAACCCCTAAAAAGCCCCACCATGGCCGATTCCAGGGCTCTTCCTCCTCGCTCCGGAGCTGGAATCGTCAGAAGTATCCGCTTGGAGAACTTCATGTGTCATAGCAATTTGCACATTGAGTTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATCAAAACTGGTTGCAGTTATGCCGTCATCCAAGTTGAATTGAAAAATAATGGGGCGGATGCTTTTAAGCATGAAATATATGGTGATGTTATAATCATAGAGAGAAGGATTTCTGAAGCCTCCGGTGCCATCGTGTTGAAGGATTCTCAAGGAAAAAAGGTTGCCAGTAGGAGGGACGAACTTCGCGAGCTAGTAGAGCATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTGCTTCAGCAAGTTAATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCACTTGTTGATGACTTGGAGTCTACCATACGGCCTGTAGAGAAGGAGCTAAATGAACTGCGAGGAAAAATAAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTCCAACAATTAAAGAAAAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAGATTGAAAAGCTCAAAGATCGCATTCCTGTTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAGGAGGAGCATGGCCGGAAAATGAACTACATCCAAAGTATGGTAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCATGATATTCAAGAGCAGCACATGAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGTTTGAAGCTGCAAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAGACTTCCTTATTGGATAGCCTATACAAAGGGAGGAGTGAAATAAAAAAGATTGCTGAAGAGGTAAAACAAGGATCCTTGCATGGCAACCCACTGGATATTGTGTGCCAATTTTTTGTGTCGTGGAATGTAAAGGAGTCCTCTCTTCGGTTATCTTGTTCTTGTCCCATGATTGAAGCTTATGAGAAAAAGCATTATGAATTTTCTCACTCTATTCGAGAGCTAAGGCAGCATCAATCAAACAAGGTTACAGCTTTTGGAGGTGAAAAAGTCCTTCAGTTATTACGTGTGATTGAGAGACAATTTCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGATCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCCTTGGGAGGTTGCTCAATGCTTTCATTGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAACTATAAGTACCTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTGAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTAATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTAGGTAAATCAGTTGCATTTGACCAACGAATCTCAAATCTCAAGGAGGTCTTCACATTAGATGGATATAAAATGTTTTCTCGGGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGACCTAGAAGTGGTAGACTCTGTAGTTCTTTTGATGACCAAATTAAAAGTCTCGAAAAAGATGCATCGAGTGTAAAAGCAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGGTGCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAGGCAATGTGAAGGAAGGATTTTCGATTGTGGAGTCCCAACCCCTCTCTTGGCTTCTCTTGTCGGTCTCTCTTCCAATGCCTGTTGGCCTCTCTCCTACTGATAGGAGGTGTTCGGGTGCGGAACGTTTTTTAATGGCCAAAAATATGGAGCTGCAAGATTTACAGAAGTCACAAGTTGCTGAAACTAGTTCATTACCTTCATCAAATGTTGACGAACTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAAGTTGCTTCTGGAAAAGTTTAGAGATAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGCATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGATGCAGATTGAACGAGATCTCCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGCATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGTGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGCGAAATTGAGGCTTTAGGTGATTGGGACGGGAGCACGCCCGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAATGAGACCAGAAGATATTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGTACAATACTAAGGAAACAACAGACTTACAAAGGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTGGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTAACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGGATCAGTGGAAATATAAAAGTCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGCGATACACGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATCGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATTGGCATGGTAAAACAAGGAGCACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3558 41.54 QSHSSVEEQKRERQRTSSRHKNSILVQLQIKLRHISSHSKIFILLHQYQSFHFPIPQGFAEPLKSPTMADSRALPPRSGAGIVRSIRLENFMCHSNLHIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVIQVELKNNGADAFKHEIYGDVIIIERRISEASGAIVLKDSQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSAKIEKLKDRIPVCRAKIDHQLGLAEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESEFEAAKSTVMRLKEEETSLLDSLYKGRSEIKKIAEEVKQGSLHGNPLDIVCQFFVSWNVKESSLRLSCSCPMIEAYEKKHYEFSHSIRELRQHQSNKVTAFGGEKVLQLLRVIERQFRRFKKPPIGPIGSHLNLINGDMWAPAVENALGRLLNAFIVTDHRDSLLLRGCANEANYKYLPIIIYDFSRPLLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASSVKAEAEQCRKRKRGAEEQLRDLEENLGNVKEGFSIVESQPLSWLLLSVSLPMPVGLSPTDRRCSGAERFLMAKNMELQDLQKSQVAETSSLPSSNVDELHQEISKIQEEIQENKLLLEKFRDRMKEAEAKAKDLKASFENLCESAKGEIDAFEEAERDMMQIERDLHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELECHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRYSESLEDLRMMYEKKERTILRKQQTYKGFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGNIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFASAQGSQWIFITPHDIGMVKQGARIKKQQMAAPRS 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2644389 2662289 - Maker00002645 Lcy6g0287 634731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0287 1185 Gene3D - 934 1180 IPR027417 -
Lcy6g0287 1185 Coils Coil 935 955 - -
Lcy6g0287 1185 SUPERFAMILY Smc hinge domain 526 714 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Lcy6g0287 1185 Coils Coil 983 1021 - -
Lcy6g0287 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 1167 IPR027417 -
Lcy6g0287 1185 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 7 1183 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Lcy6g0287 1185 Coils Coil 256 290 - -
Lcy6g0287 1185 MobiDBLite consensus disorder prediction 1 19 - -
Lcy6g0287 1185 Pfam RecF/RecN/SMC N terminal domain 83 1176 IPR003395 -
Lcy6g0287 1185 MobiDBLite consensus disorder prediction 1 20 - -
Lcy6g0287 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 362 IPR027417 -
Lcy6g0287 1185 Coils Coil 738 779 - -
Lcy6g0287 1185 Gene3D - 82 281 IPR027417 -
Lcy6g0287 1185 Coils Coil 407 427 - -
Lcy6g0287 1185 Coils Coil 843 926 - -
Lcy6g0287 1185 Coils Coil 351 371 - -
Lcy6g0287 1185 Coils Coil 429 463 - -
Lcy6g0287 1185 Coils Coil 379 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0287 K22804 - - csv:101208493 1809.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1882 Lcy-Chr3:45972005 Lcy6g0287 Lcy-Chr6:2644389 2.68E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g1882 . 2 757 Structural Maintenance of Chromosomes family AT5G15920 65.6 3.0e-283 972.2
Lcy6g0287 . 77 1186 Structural Maintenance of Chromosomes family AT5G07660 59.6 0.0e+00 1222.2
Lcy6g0287 . 63 1186 Structural Maintenance of Chromosomes family AT5G61460 62.5 0.0e+00 1307.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32