Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0287 CAATCGCACTCTTCAGTAGAAGAACAGAAGAGGGAAAGACAAAGAACTTCTTCCCGCCACAAAAACTCCATTCTCGTTCAGTTACAGATTAAGCTTCGGCATATTTCTTCTCACTCCAAAATCTTCATTCTTCTTCACCAGTACCAATCTTTCCACTTCCCCATTCCTCAAGGATTCGCGGAACCCCTAAAAAGCCCCACCATGGCCGATTCCAGGGCTCTTCCTCCTCGCTCCGGAGCTGGAATCGTCAGAAGTATCCGCTTGGAGAACTTCATGTGTCATAGCAATTTGCACATTGAGTTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATCAAAACTGGTTGCAGTTATGCCGTCATCCAAGTTGAATTGAAAAATAATGGGGCGGATGCTTTTAAGCATGAAATATATGGTGATGTTATAATCATAGAGAGAAGGATTTCTGAAGCCTCCGGTGCCATCGTGTTGAAGGATTCTCAAGGAAAAAAGGTTGCCAGTAGGAGGGACGAACTTCGCGAGCTAGTAGAGCATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTGCTTCAGCAAGTTAATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCACTTGTTGATGACTTGGAGTCTACCATACGGCCTGTAGAGAAGGAGCTAAATGAACTGCGAGGAAAAATAAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAGGTCCAACAATTAAAGAAAAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAGATTGAAAAGCTCAAAGATCGCATTCCTGTTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAGGAGGAGCATGGCCGGAAAATGAACTACATCCAAAGTATGGTAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCATGATATTCAAGAGCAGCACATGAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGTTTGAAGCTGCAAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAGACTTCCTTATTGGATAGCCTATACAAAGGGAGGAGTGAAATAAAAAAGATTGCTGAAGAGGTAAAACAAGGATCCTTGCATGGCAACCCACTGGATATTGTGTGCCAATTTTTTGTGTCGTGGAATGTAAAGGAGTCCTCTCTTCGGTTATCTTGTTCTTGTCCCATGATTGAAGCTTATGAGAAAAAGCATTATGAATTTTCTCACTCTATTCGAGAGCTAAGGCAGCATCAATCAAACAAGGTTACAGCTTTTGGAGGTGAAAAAGTCCTTCAGTTATTACGTGTGATTGAGAGACAATTTCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGATCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCCTTGGGAGGTTGCTCAATGCTTTCATTGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAACTATAAGTACCTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTGAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTAATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTAGGTAAATCAGTTGCATTTGACCAACGAATCTCAAATCTCAAGGAGGTCTTCACATTAGATGGATATAAAATGTTTTCTCGGGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGACCTAGAAGTGGTAGACTCTGTAGTTCTTTTGATGACCAAATTAAAAGTCTCGAAAAAGATGCATCGAGTGTAAAAGCAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGGTGCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAGGCAATGTGAAGGAAGGATTTTCGATTGTGGAGTCCCAACCCCTCTCTTGGCTTCTCTTGTCGGTCTCTCTTCCAATGCCTGTTGGCCTCTCTCCTACTGATAGGAGGTGTTCGGGTGCGGAACGTTTTTTAATGGCCAAAAATATGGAGCTGCAAGATTTACAGAAGTCACAAGTTGCTGAAACTAGTTCATTACCTTCATCAAATGTTGACGAACTTCATCAAGAAATTTCTAAAATCCAAGAGGAGATACAAGAGAATAAGTTGCTTCTGGAAAAGTTTAGAGATAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGCATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGATGCAGATTGAACGAGATCTCCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGCATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGTGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGCGAAATTGAGGCTTTAGGTGATTGGGACGGGAGCACGCCCGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAATGAGACCAGAAGATATTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGTACAATACTAAGGAAACAACAGACTTACAAAGGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTGGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTAACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGGATCAGTGGAAATATAAAAGTCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGCGATACACGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGACGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATCGGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATTGGCATGGTAAAACAAGGAGCACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3558 41.54 QSHSSVEEQKRERQRTSSRHKNSILVQLQIKLRHISSHSKIFILLHQYQSFHFPIPQGFAEPLKSPTMADSRALPPRSGAGIVRSIRLENFMCHSNLHIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVIQVELKNNGADAFKHEIYGDVIIIERRISEASGAIVLKDSQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQGQSAKIEKLKDRIPVCRAKIDHQLGLAEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESEFEAAKSTVMRLKEEETSLLDSLYKGRSEIKKIAEEVKQGSLHGNPLDIVCQFFVSWNVKESSLRLSCSCPMIEAYEKKHYEFSHSIRELRQHQSNKVTAFGGEKVLQLLRVIERQFRRFKKPPIGPIGSHLNLINGDMWAPAVENALGRLLNAFIVTDHRDSLLLRGCANEANYKYLPIIIYDFSRPLLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASSVKAEAEQCRKRKRGAEEQLRDLEENLGNVKEGFSIVESQPLSWLLLSVSLPMPVGLSPTDRRCSGAERFLMAKNMELQDLQKSQVAETSSLPSSNVDELHQEISKIQEEIQENKLLLEKFRDRMKEAEAKAKDLKASFENLCESAKGEIDAFEEAERDMMQIERDLHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELECHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRYSESLEDLRMMYEKKERTILRKQQTYKGFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGNIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFASAQGSQWIFITPHDIGMVKQGARIKKQQMAAPRS 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2644389 2662289 - Maker00002645 Lcy6g0287 634731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0287 1185 Gene3D - 934 1180 IPR027417 -
Lcy6g0287 1185 Coils Coil 935 955 - -
Lcy6g0287 1185 SUPERFAMILY Smc hinge domain 526 714 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Lcy6g0287 1185 Coils Coil 983 1021 - -
Lcy6g0287 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 1167 IPR027417 -
Lcy6g0287 1185 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 7 1183 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Lcy6g0287 1185 Coils Coil 256 290 - -
Lcy6g0287 1185 MobiDBLite consensus disorder prediction 1 19 - -
Lcy6g0287 1185 Pfam RecF/RecN/SMC N terminal domain 83 1176 IPR003395 -
Lcy6g0287 1185 MobiDBLite consensus disorder prediction 1 20 - -
Lcy6g0287 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 362 IPR027417 -
Lcy6g0287 1185 Coils Coil 738 779 - -
Lcy6g0287 1185 Gene3D - 82 281 IPR027417 -
Lcy6g0287 1185 Coils Coil 407 427 - -
Lcy6g0287 1185 Coils Coil 843 926 - -
Lcy6g0287 1185 Coils Coil 351 371 - -
Lcy6g0287 1185 Coils Coil 429 463 - -
Lcy6g0287 1185 Coils Coil 379 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1882 Lcy-Chr3:45972005 Lcy6g0287 Lcy-Chr6:2644389 2.68E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0287 K22804 - csv:101208493 1809.65