Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0288 ATGAACCCAGATTCTTATAGTTGCGTTTTGTTCGTCTCTGTTGTTCTTTTGATCGTCGTCTCTTTCGTTGAGGTTCTTTCTGCAACTTCAACTACTCCAACAGTTTTGCCCCTTCAACTTCTCTCTCTGCTTTCCCTGAAATCCTCCATTAAAGACCCGTCGTCGAGCTTCCATGACTGGGACCCTTCACCCACCTTCAGCAAAGCTGATTTTCAGGATCCAATTTGGTGTTCGTGGTCTGGAATTGAATGTCATCAGAACTCAGCTCAAATCACTTCATTGGACTTGTCTCGTCGTAATCTCTCTGGCTTCATTCCTTCTGAAATCAAGTACTTGACGAGCTTAATCCACTTGAATTTGAGTGGCAACAGCTTTCTTGGGCCTTTCCCTACCGCCATTTTCGAGCTCCCTCAGCTTAGAACTCTCGATATTGGTTACAACAACTTCAGCTCCACTTTCCCACCTGGGATTTCTAAGCTCAAGTTCTTGAACGTCTTCAATGCCTACAGCAACGCCTTCACTGGCCCATTACCGCAAGAAATAGCTCATCTTCGGTTCCTCGAATGGCTCAGCCTCGGTGGAAGCTACTTCAATGGCAGTATTCCGGCGAGCTACGGCGGTTTATCGCGGTTGAGGTATTTGAATTTGGCTGGAAATGTTCTGGATGGTCAAATTCCAGTGCAACTCGCGTACTTGACGCAACTCGAGAGAATGGAAATCGGTTACAATAACTTCTCCGGCGGGATTCCGGCGGGATTTTCGTTGTTGTTGAATCTGAATTACTTGGATATCGCCGGAGCGAATCTCGCCGGAACTCTGCCGCAGGACATTGGGAACATGACGAAGCTTCAAAAGCTGCTTCTCTTCAAGAATCGAATCACGGGCGAAATTCCTGAGAGTTTAGGGAAATTAGAAGCGCTTAAGGAGCTTGATTTGTCTGAGAATCAACTCACCGGAAGAATTCCGTCGGATTTGTATAATCTGAAGGAATTGACAGAGTTGAGTTTGATGAGGAACGATCTCACCGGGGAAATTCCAGAAGCAGTTGGCGATCTTCCAAATCTAGCCATTTTGAAATTATGGAACAATTCGCTCACAGGACCACTCCCTCAGAAACTCGGCTTGAACGAAAAGTTACAGCAAGTCGATCTGTCGTCGAATATGCTTACCGGGCCGATTCCTCCGAATCTCTGCCATGGAAACAAGCTCCTTAAGCTCATTCTGTTTTCCAACAATTTAGGGCACGAACTTCCCGCCTCTTTAGCGAACTGCACGTCTCTCTCTCGCTTTCGAATCCAAAATAACCGCCTCAACGGCTCGATTCCTCGCGGTTTCGGACTGCTGGAGAATCTGATATTCGCCGATTTCAGCAACAATAACTTCTCCGGCGAGATTCCGGCGGATTTTGGTAATGCAGTTAGGTTACAGTACTTGAACATTTCACAAAACGCCTTCGGAACTTCCTTGCCGGAGAATATCTGGAACTCGACGACGTTAGAGATTTTCTCGGCCAGTACTTCGAAAGTCGTTGGTAATATCCCCGATTTCGTTGGATGTAGATCCATCTACAAGATCGAACTCCAGGACAATGACTTAAACGGCAGTATTCCGTGGACAATCGGCCACTGCGAGAAGTTAGTCACTCTGAATTTAAGCCGGAATTCATTAACCGGCATTATTCCATGGGAGATTTCAACGCTGCCGTCGATCACCGCCATTGATCTCTCACGAAACTTCCTCACAGGTACAATCCCTTCAAATTTCCAAAACTGTAGCACAATCGAAAGCTTCAACGTATCATACAACAACCTCACCGGCCCCATCCCATCCACCGGAACGATCTTCCCGGGATTACACCCGTCGTCATTCACCGGCAACGACGGACTCTGCGGCGAGATTCTGGCAAAACTCTGCGCCGCCGACACACTCTCCGCCGGCGCGATAGAGGTCCGGCAGCAGCAGCCGCGACGGACGGCGGGAGCAATAGTGTGGATAATGGCAGCGGCGTTCGGAATCGGACTGTTCGTGTTAGTAGCCGGAACGCGGTGTTTTCAGGCGAATTACAGCCGTGGATTCGGCGGTGGGGACGAGGAAATCGGACCGTGGAAATTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGACGTGTTGGAGTGTTTGTCAATGACGGATAAGATCCTGGGAATGGGGTCCACAGGGACAGTTTACAAAGCGGAGATGCCAGGTGGCGAGATCATAGCGGTGAAGAAACTGTGGGGTAAATACAAAGAGAACATCCGACGGCGGAGAGGGGTTCTGGCGGAAGTGGATGTACTGGGGAACGTGAGGCACAGGAACATAGTGAGATTGTTAGGGTGCTGCAGCAACAGGGACTGTACGATGCTGCTCTACGAGTATATGCCAAACGGTAATTTGGACGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTGTGCGCGGATTGGATGACAAGGTATAAAATTGCACTGGGTGTGGCTCAGGGGATTTGTTATCTTCACCACGACTGTGATCCGGTGATCGTCCACCGTGATCTCAAGCCGAGTAATATTCTATTGGACGGTGAGATGGAGGCCAGAGTCGCGGATTTTGGCGTCGCTAAGTTGATCCAGACCGATGAATCCATGTCGGTGATCGCCGGATCGTACGGTTACATTGCGCCAGAGTACGCTTACACGCTTCAAGTGGATGAAAAGAGTGATATTTATAGCTACGGAGTTGTGTTGATGGAGATACTAAGTGGAAAGAGATCTGTGGATCCAGAATTTGGCGATGGGAATAGCATTGTGGATTGGGTGAGATCCAAGATTAAGATCAAGGATGGAGTCAATCAAATATTGGATAACAACGCAGGCGCATCTTGTGCATCTGTTAGAGAAGAAATGATACAAATGCTTCGCATTTCATTGCTCTGTACGAGTCGTAACCCTGCAGATCGTCCATCGATGCGTGACGTTGTTTTGATGCTGCAAGAGGCGAAACCTAAGAGGAAATTGCCTGGAAACGGTACGTTCGGAGGCGATACAGGATTGGACCGAGTGGAACCGGGACGACCAAGAGTAGCATGGGCCGAACTGAGGCAGAAGGACTCGGGCCACACAAGTGGGGCGAGTGGTCGGCCTTGGGCTGAGGCCAACCATATGGGTCGAGTCAAGTCCCGGTCCCTCCAACCTTGGCCCGACCTTTTGGTCCGTTCGCCTGGAGTCCATTTTCCAGTCCTATTTCTGGGCTCGCGTCGGGTTGTCCTCGTCAATTCCTTGTACATCAGAGTGGTCTAA 3300 49.21 MNPDSYSCVLFVSVVLLIVVSFVEVLSATSTTPTVLPLQLLSLLSLKSSIKDPSSSFHDWDPSPTFSKADFQDPIWCSWSGIECHQNSAQITSLDLSRRNLSGFIPSEIKYLTSLIHLNLSGNSFLGPFPTAIFELPQLRTLDIGYNNFSSTFPPGISKLKFLNVFNAYSNAFTGPLPQEIAHLRFLEWLSLGGSYFNGSIPASYGGLSRLRYLNLAGNVLDGQIPVQLAYLTQLERMEIGYNNFSGGIPAGFSLLLNLNYLDIAGANLAGTLPQDIGNMTKLQKLLLFKNRITGEIPESLGKLEALKELDLSENQLTGRIPSDLYNLKELTELSLMRNDLTGEIPEAVGDLPNLAILKLWNNSLTGPLPQKLGLNEKLQQVDLSSNMLTGPIPPNLCHGNKLLKLILFSNNLGHELPASLANCTSLSRFRIQNNRLNGSIPRGFGLLENLIFADFSNNNFSGEIPADFGNAVRLQYLNISQNAFGTSLPENIWNSTTLEIFSASTSKVVGNIPDFVGCRSIYKIELQDNDLNGSIPWTIGHCEKLVTLNLSRNSLTGIIPWEISTLPSITAIDLSRNFLTGTIPSNFQNCSTIESFNVSYNNLTGPIPSTGTIFPGLHPSSFTGNDGLCGEILAKLCAADTLSAGAIEVRQQQPRRTAGAIVWIMAAAFGIGLFVLVAGTRCFQANYSRGFGGGDEEIGPWKLTAFQRLNFTAEDVLECLSMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRDCTMLLYEYMPNGNLDDLLHGKNKGENLCADWMTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDPEFGDGNSIVDWVRSKIKIKDGVNQILDNNAGASCASVREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQEAKPKRKLPGNGTFGGDTGLDRVEPGRPRVAWAELRQKDSGHTSGASGRPWAEANHMGRVKSRSLQPWPDLLVRSPGVHFPVLFLGSRRVVLVNSLYIRVV 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2663187 2668716 - Maker00002896 Lcy6g0288 634732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0288 1099 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 1000 IPR050647 -
Lcy6g0288 1099 ProSitePatterns Protein kinases ATP-binding region signature. 728 751 IPR017441 GO:0005524(InterPro)
Lcy6g0288 1099 Pfam Protein kinase domain 725 994 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0288 1099 SUPERFAMILY Protein kinase-like (PK-like) 725 997 IPR011009 -
Lcy6g0288 1099 FunFam leucine-rich repeat receptor-like protein kinase TDR 801 1009 - -
Lcy6g0288 1099 SUPERFAMILY RNI-like 297 618 - -
Lcy6g0288 1099 Gene3D Phosphorylase Kinase; domain 1 704 800 - -
Lcy6g0288 1099 SUPERFAMILY L domain-like 71 411 - -
Lcy6g0288 1099 SMART serkin_6 722 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0288 1099 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 695 800 - -
Lcy6g0288 1099 Pfam Leucine Rich Repeat 474 495 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 Pfam Leucine Rich Repeat 378 399 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 Gene3D Ribonuclease Inhibitor 161 255 IPR032675 -
Lcy6g0288 1099 FunFam Leucine-rich repeat receptor-like protein kinase TDR 325 640 - -
Lcy6g0288 1099 SMART LRR_typ_2 208 232 IPR003591 -
Lcy6g0288 1099 SMART LRR_typ_2 304 328 IPR003591 -
Lcy6g0288 1099 SMART LRR_typ_2 473 496 IPR003591 -
Lcy6g0288 1099 SMART LRR_typ_2 567 590 IPR003591 -
Lcy6g0288 1099 SMART LRR_typ_2 352 376 IPR003591 -
Lcy6g0288 1099 SMART LRR_typ_2 136 160 IPR003591 -
Lcy6g0288 1099 Gene3D Transferase(Phosphotransferase) domain 1 801 1008 - -
Lcy6g0288 1099 Pfam Leucine rich repeat 282 341 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 Pfam Leucine rich repeat 521 578 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515(InterPro)
Lcy6g0288 1099 ProSiteProfiles Protein kinase domain profile. 722 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0288 1099 Gene3D Ribonuclease Inhibitor 328 644 IPR032675 -
Lcy6g0288 1099 FunFam Leucine-rich repeat receptor-like protein kinase 39 201 - -
Lcy6g0288 1099 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 227 321 - -
Lcy6g0288 1099 Gene3D Ribonuclease Inhibitor 40 160 IPR032675 -
Lcy6g0288 1099 Gene3D Ribonuclease Inhibitor 258 327 IPR032675 -
Lcy6g0288 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2080 Lcy-Chr12:42168094 Lcy6g0288 Lcy-Chr6:2663187 6.38E-55 dispersed
Lcy1g1936 Lcy-Chr1:22990893 Lcy6g0288 Lcy-Chr6:2663187 1.17E-60 dispersed
Lcy4g2049 Lcy-Chr4:47064171 Lcy6g0288 Lcy-Chr6:2663187 2.28E-45 dispersed
Lcy5g1816 Lcy-Chr5:40942026 Lcy6g0288 Lcy-Chr6:2663187 3.89E-06 dispersed
Lcy6g0288 Lcy-Chr6:2663187 Lcy6g1085 Lcy-Chr6:12136941 7.34E-89 dispersed
Lcy8g0991 Lcy-Chr8:34722961 Lcy6g0288 Lcy-Chr6:2663187 6.64E-06 dispersed
Lcy6g0288 Lcy-Chr6:2663187 Lcy13g0444 Lcy-Chr13:5209544 3.03E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66008 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0288 - - - 0.0