Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0308 ATGATCGTCTTCAATTCCCTCCACGACGCCGTCGTTTTTGGCCTCTCCCCTCTCGATTCCCTCCACCTGCCGGACACTTCCTCCGCCGTCAAAACCGAGCCCTTTCCCACCACCACGGCGGAGGCTGCTGCTGCGCCCGCGTCTTTGGTGGCTGGTCGGGGGCGGCGCTACCGTGGGGTGCGGAGGCGGCCGTGGGGGAAGTACGCGTCGGAGATTCGGGATCCGGCCAAGAGTGGCGCACGTGTGTGGCTTGGCACGTACGAGACTGCTGAGGATGCGGCTTTGGCCTACGACCGAGCCGCCTTCAGAATGCGCGGCTCTAAGGCTCTTCTTAACTTCCCTAACCGCATTGGCTCCGGCGACCCGCCGCCGCTTAGAGTCTCGGCGCGCCGACGGGAACATGACCTCGTTATGCCTTTGGCTAACGGCGGCGCGGCTAAGAGGAGGAAAGCCGCGGCTGGTAAAGAAGCCGAGCCGGTGAGAGAGACGGAGTCGCTTGTTTTTCAGGTGGGGCCCAAGATGGCTGGGTTGCCAGTTGGCGAGCAGCTATTGGTTAGCTAG 561 63.46 MIVFNSLHDAVVFGLSPLDSLHLPDTSSAVKTEPFPTTTAEAAAAPASLVAGRGRRYRGVRRRPWGKYASEIRDPAKSGARVWLGTYETAEDAALAYDRAAFRMRGSKALLNFPNRIGSGDPPPLRVSARRREHDLVMPLANGGAAKRRKAAAGKEAEPVRETESLVFQVGPKMAGLPVGEQLLVS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2917592 2918152 - Maker00002774 Lcy6g0308 634752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0308 186 PANTHER DNA-BINDING DOMAIN 41 140 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy6g0308 186 CDD AP2 64 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 FunFam Ethylene-responsive transcription factor 2 55 115 - -
Lcy6g0308 186 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 Gene3D AP2/ERF domain 55 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677(InterPro)
Lcy6g0308 186 SMART rav1_2 56 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g0308 186 Pfam AP2 domain 56 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2129 Lcy-Chr11:44812443 Lcy6g0308 Lcy-Chr6:2917592 8.31E-31 dispersed
Lcy6g0308 Lcy-Chr6:2917592 Lcy6g2137 Lcy-Chr6:45213564 1.87E-42 dispersed
Lcy6g0307 Lcy-Chr6:2903503 Lcy6g0308 Lcy-Chr6:2917592 3.65E-30 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20233 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0308 K09286 - vvi:100244163 160.229