Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0312 ATGATGCCCACAAAATTCAATACCACCCATGCCGAATTAGATGAATTCCAAGATGACGACCACCACCAAAATGGCTCCTTCGCCGGCTCTTCACGGCGGCGCGTGCTCGACCCGCGCTGCGCATGCGTGCAGCGGTGGAACCGCGTGGTTCTGCTGGCGCGTGCGGCATCTGTGGCGGTTGACCCGCTCTTCTTTTACGTCATTTTTCTGACCAAGGCCGGCCCGCCGTGCTTCTACCGGGATGCGGCTTTCGCCGCCGTCGTCACCGCCGTGCGCACGTGCGTGGACATGGTGCACGTGTGCCACGTGTGGATGCAGTTTCGGCTGGCGTTTGTTTCGACGGCGTCGTTGGTGGTCGGGAGTGGGCGGCTCGTGTGGGATGCACGTGCCATTGCTTCTCACTATTTGAGATCCTTCAAAGGCTTCTGGCTCGATTTGTTTGTGATTATTCCTATTCCTCAGTTGCTTCCAAAGCTTTACCACAGCATTTACTTGATGAAGAAGCTCCAAAAAGTCACTGGCTTCATCTTTGGCTGCATTTGGTGGCGCTTTAACCTCAATGTCTTTGCATATTTGATTGCTTCTCATGTTGCAGGAGGATGTTGGTATCTCCTCGCAACAGAACGACTAATCTCGTGCCTCGAACAACAATGCGAAAGAAGAAAAATGTGCAAACTTGCATTGTCTTGCTCTTCCAACTCTCCCACATCAGGCTACTACAAGGGGGCAGGAAAATTTGGAGCTCCCCATGGTAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAATGGACCCTTCAGCTATGGAATTTATGAGCCTGTTCTTTTGGTATTCTCTAGCAATTCTTTAGCTGTTAGAATTCTCTATCCAGTCTTCTGGGGATTATTGAACCTGAGTTCCTTTGGCAATGAACTTGATCCCACTAGTAATTTGGATGAAGTGATATTCAGTAGCTGCATCACACTTGCAGGGTTGGTGCTGTTTGTTACCTTAATTGGAAATATACAGATTTTCTTGCAAACTGTCATGGCGAGTGAGGAGAATATGCAAATACGGTTTCGAGATATGAAGTGGTGGATGAGGAGGCGACAATTGCCCATTCATTTGAGGGAAAGGGTTTGCAATTTTGAATATCAAAGGTGGGTAGCCATGGGAGGACTAGATGAGACTGAGCTCATCAAAGGACTGCCCGATGGCCTCCGCCGAGACATCAAACGCTACCTTTGTTTAGACCTCGTTAAGAAGGTACCTTTCTTCCACATGCTAGATGATCTCATACTCGATAACATTTGTGATCGCGTTAAACCGCTCTTGTACGCCGAAGGTGAAAAGATAGTAAGGGAGGGAGACCCTGTGCAAAGGATGGTGTTCATTGTTGAAGGATGCGTAGAGCGCAGCCAAGGCTTTGTAGGCACAAGTTTGCTAAACTCCGGTGGCTTTTTCGGCGAGGAGCTACTCTCGTGGTGTCTCCGACTCCGACACCGTCGACATTTCGATGAGCTTCCAACCTCCTTGGCAACATTTTCATGTGTACAGCCAGTAGAAGCATATGGGCTCGACGCACTCGATCTCAAGTACATTACCGAACACTTTCGGTACAAGTTTGCGAGTGAAAAGATCAAGCGAACGATGCGCTATTACTCTTCGAATTGGCGAACATGGGGAGCTGTGATCATTCAGTCTTCATGGCGTCGCCACCGGATACGAACTCGAGGTTACACGACACGAGACCGAACAGCTGACAATCGACTGAGGCAGTATGCTGCAGTTTTCTTGTCAATGAAGCCGAACGATCATCTCGAGTAG 1812 49.06 MMPTKFNTTHAELDEFQDDDHHQNGSFAGSSRRRVLDPRCACVQRWNRVVLLARAASVAVDPLFFYVIFLTKAGPPCFYRDAAFAAVVTAVRTCVDMVHVCHVWMQFRLAFVSTASLVVGSGRLVWDARAIASHYLRSFKGFWLDLFVIIPIPQLLPKLYHSIYLMKKLQKVTGFIFGCIWWRFNLNVFAYLIASHVAGGCWYLLATERLISCLEQQCERRKMCKLALSCSSNSPTSGYYKGAGKFGAPHGNNLTKIKSLCLEVNGPFSYGIYEPVLLVFSSNSLAVRILYPVFWGLLNLSSFGNELDPTSNLDEVIFSSCITLAGLVLFVTLIGNIQIFLQTVMASEENMQIRFRDMKWWMRRRQLPIHLRERVCNFEYQRWVAMGGLDETELIKGLPDGLRRDIKRYLCLDLVKKVPFFHMLDDLILDNICDRVKPLLYAEGEKIVREGDPVQRMVFIVEGCVERSQGFVGTSLLNSGGFFGEELLSWCLRLRHRRHFDELPTSLATFSCVQPVEAYGLDALDLKYITEHFRYKFASEKIKRTMRYYSSNWRTWGAVIIQSSWRRHRIRTRGYTTRDRTADNRLRQYAAVFLSMKPNDHLE 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2939425 2943333 - Maker00002399 Lcy6g0312 634756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0312 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 154 584 - -
Lcy6g0312 603 Gene3D Helix hairpin bin 346 411 - -
Lcy6g0312 603 ProSiteProfiles cAMP/cGMP binding motif profile. 420 488 IPR000595 -
Lcy6g0312 603 SMART cnmp_10 420 537 IPR000595 -
Lcy6g0312 603 SUPERFAMILY Voltage-gated potassium channels 43 342 - -
Lcy6g0312 603 Gene3D Jelly Rolls 418 535 IPR014710 -
Lcy6g0312 603 CDD CAP_ED 420 503 IPR000595 -
Lcy6g0312 603 SUPERFAMILY cAMP-binding domain-like 347 533 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2044 Lcy-Chr10:44534837 Lcy6g0312 Lcy-Chr6:2939425 8.28E-233 dispersed
Lcy6g0312 Lcy-Chr6:2939425 Lcy6g1250 Lcy-Chr6:15082756 3.17E-165 dispersed
Lcy6g0312 Lcy-Chr6:2939425 Lcy8g1911 Lcy-Chr8:45376747 4.97E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0312 K05391 - rcu:8281281 741.495