Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0313 ATGTTTCAAGGGTTTGTTTTCAGCTTAAATGACGTGTACGGCCACGATATCTCCGCCGTGTCTCTGCCTGAATTCACCGTCAGCCGCTTAACGGAACATGTCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGCCCAAGAACCCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACCGCCGTCGCCTGCCCGGCTTTCCGGACTGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTCGCTCATGGCGTTTTCGAGTTCTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGCAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCGGAGACCAAACTGAAGTTTAATTTCAATGCTTACCGGCCGCGTGCGGTGGTGGCCGCCGTTGAAGGTACTGTGGAGAGGGAGAACGACGGCGTTCTGGAAACTCCGGGGAGGGAGAATGGCGGCGGCCGGCGGGGAAATGAAGGGAGTTATGGATTGGAGCCGTCGGAGTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA 654 58.26 MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAYRPRAVVAAVEGTVERENDGVLETPGRENGGGRRGNEGSYGLEPSELELPHIEWISELLQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2946879 2947532 - Maker00002657 Lcy6g0313 634757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0313 217 Gene3D - 81 153 - -
Lcy6g0313 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Lcy6g0313 217 SUPERFAMILY CCCH zinc finger 84 114 IPR036855 GO:0046872(InterPro)
Lcy6g0313 217 MobiDBLite consensus disorder prediction 174 200 - -
Lcy6g0313 217 PANTHER UNKEMPT FAMILY MEMBER 37 148 IPR045234 -
Lcy6g0313 217 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
Lcy6g0313 217 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Lcy6g0313 217 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0313 Lcy-Chr6:2946879 Lcy7g0994 Lcy-Chr7:10389301 6.20E-50 dispersed
Lcy6g0313 Lcy-Chr6:2946879 Lcy2g0889 Lcy-Chr2:8141815 7.91E-54 transposed
Lcy6g0313 Lcy-Chr6:2946879 Lcy9g1994 Lcy-Chr9:44798174 5.24E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20234 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0313 - - - 0.0