Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0352 ATGATGAAGCTGCAAACATACGCGGGAATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGCCAGTTTTACCCAGCATTAGTCTATTTATCAACTTCCAAGATCAATCTGGTGCTTCTTCTCAATATGGGTCTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTTGGTTCTCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCGTGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGGCAAGATTTTTCTGTTGCATTCCTTGGAATGGTTACGGCTCTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCAGGATCGTTTCTTTCTTGGGGTTTCTCTTTGTTCTAGATAGTCTGTTTTTTTATAACTCAATAGAGTCTCTGATACAGACAAGGAAGGCCTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCTGTGTCAACATTTGTGAAATATATTTTCTATGTCAGTGATGTACTTATGGAGGGACAGTGGGAAAGGAAGCCTGTCTATACATTCTACTTGGAGCTTATCCGAGACTTACTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGCGTGCCTTTGCACTTGATCAGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCAGATGCAACACCCGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCGAAGAAACTAGTATGTGGGCATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAACAGGAGGTCATCAGGGATTGCAGTCTGATGCTAACCAACAAGGAGCAGGAACCACAAATTCATCTGCACAAGGTTCAAGTGGTACTGGTGTTGCTGGTGATAATTTGAGTCATCATCAGGCTAGAGTCCGAGCTGCTGCGGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTCAAAGACCTTTGCCTGACTCCAACAATATAGAATCGAGTGGAGAACAAGCCCCCAATGAACAACCGCAATATTTTCCATTTACTGGCGGCCCTGCAAACCTGTCCTTCACTCAAATTCCCCAAAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGCACTATAAACCATACAGATGGATTGGGAAGTAGTCAAAACATATCAGGCTCACAGCTTGAAGCCCAAGAAAGATTTCTTGAACAACAGATTGAGATCCTCAAAGATCAGCTGCAACTTCTGCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGCAGCAGGCGAGGCAGATAAGAAAGGGAAAAGTGTAGCATCATCGTCACCATCGTCGTCTTCATCAGTCTCAGATTCTCAGGCACCTGGAGAAATCGAGAGGATGGTGAGATAG 1674 42.65 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTTGGHQGLQSDANQQGAGTTNSSAQGSSGTGVAGDNLSHHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVQRPLPDSNNIESSGEQAPNEQPQYFPFTGGPANLSFTQIPQNLFVPFQPREGTINHTDGLGSSQNISGSQLEAQERFLEQQIEILKDQLQLLRKPKVEESSRAAGEADKKGKSVASSSPSSSSSVSDSQAPGEIERMVR 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3263459 3271789 + Maker00002441 Lcy6g0352 634796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0352 557 MobiDBLite consensus disorder prediction 531 548 - -
Lcy6g0352 557 CDD RING-H2_synoviolin 289 330 - -
Lcy6g0352 557 MobiDBLite consensus disorder prediction 509 527 - -
Lcy6g0352 557 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Lcy6g0352 557 SMART ring_2 292 329 IPR001841 -
Lcy6g0352 557 Pfam Ring finger domain 291 330 IPR001841 -
Lcy6g0352 557 PANTHER RING ZINC FINGER PROTEIN 2 337 IPR050731 -
Lcy6g0352 557 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Lcy6g0352 557 MobiDBLite consensus disorder prediction 340 375 - -
Lcy6g0352 557 SUPERFAMILY RING/U-box 272 336 - -
Lcy6g0352 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Lcy6g0352 557 Coils Coil 486 506 - -
Lcy6g0352 557 MobiDBLite consensus disorder prediction 509 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0352 Lcy-Chr6:3263459 Lcy12g1037 Lcy-Chr12:17669195 1.83E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0352 K10601 - csv:101215351 984.556