Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0353 ATGTCGGTGACGGTGGGTTCTTCGTCTTCTCTGTGGATCATTTCGGTGCTTTGTTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATCCTACACTTGTTAATCCCTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGACCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCGGAGTCTACAGTATTTGGAGCTTTATAGTAACAATATTACTGGAGGAATTCCGGAGGAGCTTGGGGAGTTGTCAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCCGTCACACTTGGCCAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACTATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTTCTGGATCTTTCTTACAACCACCTAACTGGAGATATTCCGATCAATGGTTCCTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATAACCTCAATGAGTCTGCTGTACGTCCTCCACCACCTCCTTTACCTTCTTCACCACCCCCCACATCAGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACAAATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAAGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAAGGTGGGGAGTTGCAATTCCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGCTGGTCTATCCCTTTATGGTTAATGGAAGTGTAGCATCATGTTTAAGAGAACGTAAAGAAACACAGCCTCCACTTAATTGGTCAAATCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAAATTATTCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGATGAGGAGTTTGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGTGGAACAATTGGGCATATTGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGACGTATTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCATTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTCAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGACCTTGAGGGAAACTATCCCAATGACGAAGTCGAGCAGCTTATTCAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACGGAGCGACCTAAGATGTCGGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCAGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTCCATCAAGAAGTAAGCCGCAATCCCCCAAGTACTACTTGGATTCTTGACTCTACTACTGAAATGCCTCCTGATGAATTGTCCGGTCCAAGATGA 1707 44.7 MSVTVGSSSSLWIISVLCFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGQLRSLQYLELYSNNITGGIPEELGELSNLVSLDLYLNNLTGPIPVTLGQLEKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFAHNNLNESAVRPPPPPLPSSPPPTSAEEDPEVHLGQLKRFSLRELQVATDHFSNKQILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERKETQPPLNWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLEGNYPNDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQEVSRNPPSTTWILDSTTEMPPDELSGPR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3272780 3283522 + Maker00002503 Lcy6g0353 634797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0353 568 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lcy6g0353 568 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Lcy6g0353 568 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lcy6g0353 568 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Lcy6g0353 568 SUPERFAMILY Protein kinase-like (PK-like) 224 521 IPR011009 -
Lcy6g0353 568 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 567 - -
Lcy6g0353 568 MobiDBLite consensus disorder prediction 203 219 - -
Lcy6g0353 568 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lcy6g0353 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0353 568 MobiDBLite consensus disorder prediction 200 224 - -
Lcy6g0353 568 SMART serkin_6 246 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0353 568 Gene3D Transferase(Phosphotransferase) domain 1 323 540 - -
Lcy6g0353 568 Gene3D Phosphorylase Kinase; domain 1 217 322 - -
Lcy6g0353 568 MobiDBLite consensus disorder prediction 538 568 - -
Lcy6g0353 568 FunFam Somatic embryogenesis receptor kinase 1 217 322 - -
Lcy6g0353 568 FunFam Somatic embryogenesis receptor-like kinase 1 323 540 - -
Lcy6g0353 568 ProSiteProfiles Protein kinase domain profile. 246 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0353 568 SUPERFAMILY L domain-like 27 202 - -
Lcy6g0353 568 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524(InterPro)
Lcy6g0353 568 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Lcy6g0353 568 Pfam Protein tyrosine and serine/threonine kinase 249 520 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0353 568 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1482 Lcy-Chr3:41614899 Lcy6g0353 Lcy-Chr6:3272780 1.11E-30 dispersed
Lcy3g1483 Lcy-Chr3:41625710 Lcy6g0353 Lcy-Chr6:3272780 4.77E-33 dispersed
Lcy4g0181 Lcy-Chr4:2339544 Lcy6g0353 Lcy-Chr6:3272780 1.52E-16 dispersed
Lcy4g0272 Lcy-Chr4:3317985 Lcy6g0353 Lcy-Chr6:3272780 8.83E-34 dispersed
Lcy6g0353 Lcy-Chr6:3272780 Lcy6g0974 Lcy-Chr6:10234575 3.73E-202 dispersed
Lcy9g0627 Lcy-Chr9:20751177 Lcy6g0353 Lcy-Chr6:3272780 3.97E-37 dispersed
Lcy6g0353 Lcy-Chr6:3272780 Lcy9g0626 Lcy-Chr9:20737737 9.25E-215 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66010 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0353 K13416 - csv:101216389 1006.13