Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0368 ATGATTGTTGAACGGGGAAAGAAGGAGGACGTTCGTCATGTAGCACCGGAAAGGGCAGGGGTAATCAATGCCCTGCCAGTGCATGGCCGTGAGCTTGGCCTTTTTGCTATATATGATGGACATCTAGGAGACAGTGTACCAGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGTGTTTTCTGACATCTTACGATTGCTTCAGGAGGAATTCTGGTCGAATCCCCGTGGCTCCATCTTTAAGGCTTATGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCGAAAAAAGGGCAGGAAGTACAAATGTCCATTGATCATGAACCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGTTTTGTCTCTAACATGCCAGGTCTGGTAATGCATTGA 507 45.76 MIVERGKKEDVRHVAPERAGVINALPVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDVFSDILRLLQEEFWSNPRGSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGLVMH 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3404120 3405833 + Maker00002745 Lcy6g0368 634812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0368 168 SUPERFAMILY PP2C-like 18 161 IPR036457 -
Lcy6g0368 168 Gene3D - 1 168 IPR036457 -
Lcy6g0368 168 Pfam Protein phosphatase 2C 32 161 IPR001932 -
Lcy6g0368 168 CDD PP2Cc 33 161 IPR001932 -
Lcy6g0368 168 ProSiteProfiles PPM-type phosphatase domain profile. 1 168 IPR001932 -
Lcy6g0368 168 SMART PP2C_4 2 166 IPR001932 -
Lcy6g0368 168 PANTHER PROTEIN PHOSPHATASE 5 161 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0368 Lcy-Chr6:3404120 Lcy9g1733 Lcy-Chr9:42519459 1.90E-70 dispersed
Lcy9g2338 Lcy-Chr9:47748218 Lcy6g0368 Lcy-Chr6:3404120 4.55E-06 dispersed
Lcy6g0368 Lcy-Chr6:3404120 Lcy4g0673 Lcy-Chr4:8138087 4.04E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0368 K17506 - csv:101214223 248.44