Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0369 ATGATGTGTCAGACTGTAAAACTTGCCCTTCTCTGCACTATTTTGCTGGTGAAAACAAAATTGTCACGATTGAAAACAGGAAACCAGAAATTATGTCAACTTTGGTTTTTTGGAGATGTTGCAAGAGTGAACGGGCAACTTGCAGTTTCTCGAGCGTTTGGCGACAAGAACCTCAAAACACACTTGCGATCTGATCCCGACATAAAGAATGCAGACATTGACTCTGACACCGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGACGAATCAAGAGGCCGTAGATATAGCCAGAAGGACCAAGGATCCCCAGAGGGCAGCAAAGCAATTAGCTGCAGAAGCACTGAAAAGAGAAAGCAAAGACGATATCTCGATCATCGTAGTTCGTTTCAAAGGGTAA 408 43.38 MMCQTVKLALLCTILLVKTKLSRLKTGNQKLCQLWFFGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3407661 3408814 + Maker00002464 Lcy6g0369 634813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0369 135 PANTHER PROTEIN PHOSPHATASE 33 132 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy6g0369 135 SUPERFAMILY PP2C-like 40 134 IPR036457 -
Lcy6g0369 135 Gene3D - 20 135 IPR036457 -
Lcy6g0369 135 ProSiteProfiles PPM-type phosphatase domain profile. 1 133 IPR001932 -
Lcy6g0369 135 SMART PP2C_4 2 131 IPR001932 -
Lcy6g0369 135 Pfam Protein phosphatase 2C 40 126 IPR001932 -
Lcy6g0369 135 CDD PP2Cc 39 133 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0217 Lcy-Chr6:1982653 Lcy6g0369 Lcy-Chr6:3407661 8.74E-08 dispersed
Lcy6g0369 Lcy-Chr6:3407661 Lcy9g1311 Lcy-Chr9:37855499 3.34E-32 dispersed
Lcy6g0369 Lcy-Chr6:3407661 Lcy4g0673 Lcy-Chr4:8138087 1.03E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0369 K17506 - csv:101214223 184.882