Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0395 ATGACGAGGCAAAAAATTCAGATAAAGAAAATAGACAATATAGCAGCAAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTCGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGATTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGCTACCAGAGCTGAATAATTTTAGCCAAACTCCATCTCAGCTTGAAAAGGGTGCCTATGCTAAATTGACTGAAGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAGAGGAGAGGAACTTCAGGGACTTGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAATAGAGACCAAGGATGAGAAGTTTCTTAAAGAGATTGGTGCTGTCAAGGAGAAGATGGCAACTTTGAATAGAGATCAAGAACAAGCAGTGGTTGGTGGGAATTCAAAGTCAAACACCAGCAACAGCAGCTCCTCAGCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGTTATCTCTGAAGGCAGAAAGTAAGCATCTCTTCTTTGCAGCAACTTTGGCAATGGAAACTCAGCCTTCCCCAATGGAGCTTTACTAA 672 39.88 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPELNNFSQTPSQLEKGAYAKLTEEFAAKTKELRHMRGEELQGLGIEELKQLEKLLEIGLNRVIETKDEKFLKEIGAVKEKMATLNRDQEQAVVGGNSKSNTSNSSSSANPNSQDYDDISLKLGLSLKAESKHLFFAATLAMETQPSPMELY 223
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 3748462 3757816 + Maker00002947 Lcy6g0395 634839
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0395 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0395 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0395 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 FunFam Transcription factor, MADS-box 13 83 - -
Lcy6g0395 223 ProSiteProfiles K-box domain profile. 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0395 223 Pfam K-box region 86 161 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0395 223 MobiDBLite consensus disorder prediction 162 185 - -
Lcy6g0395 223 Gene3D - 15 104 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0395 223 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1475 Lcy-Chr13:33364433 Lcy6g0395 Lcy-Chr6:3748462 1.04E-50 dispersed
Lcy6g0395 Lcy-Chr6:3748462 Lcy9g1539 Lcy-Chr9:40485123 7.19E-21 dispersed
Lcy6g0395 Lcy-Chr6:3748462 Lcy6g0403 Lcy-Chr6:3814021 1.02E-26 proximal
Lcy1g0831 Lcy-Chr1:7115428 Lcy6g0395 Lcy-Chr6:3748462 3.99E-49 wgd
Lcy4g0082 Lcy-Chr4:1182000 Lcy6g0395 Lcy-Chr6:3748462 3.14E-15 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20240 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0395 - - - 0.0