Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0395 | ATGACGAGGCAAAAAATTCAGATAAAGAAAATAGACAATATAGCAGCAAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTCGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGATTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGCTACCAGAGCTGAATAATTTTAGCCAAACTCCATCTCAGCTTGAAAAGGGTGCCTATGCTAAATTGACTGAAGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAGAGGAGAGGAACTTCAGGGACTTGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAATAGAGACCAAGGATGAGAAGTTTCTTAAAGAGATTGGTGCTGTCAAGGAGAAGATGGCAACTTTGAATAGAGATCAAGAACAAGCAGTGGTTGGTGGGAATTCAAAGTCAAACACCAGCAACAGCAGCTCCTCAGCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGTTATCTCTGAAGGCAGAAAGTAAGCATCTCTTCTTTGCAGCAACTTTGGCAATGGAAACTCAGCCTTCCCCAATGGAGCTTTACTAA | 672 | 39.88 | MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPELNNFSQTPSQLEKGAYAKLTEEFAAKTKELRHMRGEELQGLGIEELKQLEKLLEIGLNRVIETKDEKFLKEIGAVKEKMATLNRDQEQAVVGGNSKSNTSNSSSSANPNSQDYDDISLKLGLSLKAESKHLFFAATLAMETQPSPMELY | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3748462 | 3757816 | + | Maker00002947 | Lcy6g0395 | 634839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0395 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 172 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy6g0395 | 223 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | CDD | MADS_MEF2_like | 3 | 69 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lcy6g0395 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
| Lcy6g0395 | 223 | ProSiteProfiles | K-box domain profile. | 83 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy6g0395 | 223 | Pfam | K-box region | 86 | 161 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy6g0395 | 223 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - | |
| Lcy6g0395 | 223 | Gene3D | - | 15 | 104 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0395 | 223 | SUPERFAMILY | SRF-like | 2 | 84 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1475 | Lcy-Chr13:33364433 | Lcy6g0395 | Lcy-Chr6:3748462 | 1.04E-50 | dispersed | |
| Lcy6g0395 | Lcy-Chr6:3748462 | Lcy9g1539 | Lcy-Chr9:40485123 | 7.19E-21 | dispersed | |
| Lcy6g0395 | Lcy-Chr6:3748462 | Lcy6g0403 | Lcy-Chr6:3814021 | 1.02E-26 | proximal | |
| Lcy1g0831 | Lcy-Chr1:7115428 | Lcy6g0395 | Lcy-Chr6:3748462 | 3.99E-49 | wgd | |
| Lcy4g0082 | Lcy-Chr4:1182000 | Lcy6g0395 | Lcy-Chr6:3748462 | 3.14E-15 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20240 | None | None | None | None | Lcy | TF |
Pathway information