Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0403 ATGGGAAGAGGAAAGATTGTGATTAGAAGGATAGATAATTCAACAAGCAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGCTGAAAAAGGCTCGAGAGCTTTCAATCCTTTGCGATGCTGAAGTTGGATTGATCATTTTTTCAAGTACTGGAAAACTCTATGATTATTCCAGCACCAGCATAAGGTCGATTACTGAACGCTACAGCAAGATGAAGGAAGAGCAAAATCAGTTGATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTTAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACTGAGCTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTCTACAAGAATCTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGTCAGCCACAACCACAAAACAACGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTATTCATGACATATGA 729 39.37 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITERYSKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENVELYKNLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPALQLSQPQPQNNETPVPGIKLGYVLAICIHDI 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3814021 3824788 + Maker00002799 Lcy6g0403 634847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0403 242 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 Coils Coil 163 183 - -
Lcy6g0403 242 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0403 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 Coils Coil 62 99 - -
Lcy6g0403 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy6g0403 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lcy6g0403 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0403 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0403 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0403 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0239 Lcy-Chr1:2165279 Lcy6g0403 Lcy-Chr6:3814021 2.73E-44 dispersed
Lcy1g0831 Lcy-Chr1:7115428 Lcy6g0403 Lcy-Chr6:3814021 3.04E-34 dispersed
Lcy6g0207 Lcy-Chr6:1858196 Lcy6g0403 Lcy-Chr6:3814021 6.75E-35 dispersed
Lcy6g0210 Lcy-Chr6:1886860 Lcy6g0403 Lcy-Chr6:3814021 3.04E-36 dispersed
Lcy6g0403 Lcy-Chr6:3814021 Lcy9g1539 Lcy-Chr9:40485123 3.24E-26 dispersed
Lcy6g0395 Lcy-Chr6:3748462 Lcy6g0403 Lcy-Chr6:3814021 1.02E-26 proximal
Lcy12g0427 Lcy-Chr12:5212290 Lcy6g0403 Lcy-Chr6:3814021 4.83E-34 transposed
Lcy1g0064 Lcy-Chr1:527054 Lcy6g0403 Lcy-Chr6:3814021 4.69E-26 transposed
Lcy1g0849 Lcy-Chr1:7257480 Lcy6g0403 Lcy-Chr6:3814021 5.57E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20241 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0403 K09264 - csv:101203098 415.616