Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0403 | ATGGGAAGAGGAAAGATTGTGATTAGAAGGATAGATAATTCAACAAGCAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGCTGAAAAAGGCTCGAGAGCTTTCAATCCTTTGCGATGCTGAAGTTGGATTGATCATTTTTTCAAGTACTGGAAAACTCTATGATTATTCCAGCACCAGCATAAGGTCGATTACTGAACGCTACAGCAAGATGAAGGAAGAGCAAAATCAGTTGATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTTAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACTGAGCTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTCTACAAGAATCTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGTCAGCCACAACCACAAAACAACGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTATTCATGACATATGA | 729 | 39.37 | MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITERYSKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENVELYKNLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPALQLSQPQPQNNETPVPGIKLGYVLAICIHDI | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3814021 | 3824788 | + | Maker00002799 | Lcy6g0403 | 634847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0403 | 242 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | Coils | Coil | 163 | 183 | - | - | |
Lcy6g0403 | 242 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy6g0403 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | Coils | Coil | 62 | 99 | - | - | |
Lcy6g0403 | 242 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy6g0403 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Lcy6g0403 | 242 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lcy6g0403 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 198 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy6g0403 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy6g0403 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0239 | Lcy-Chr1:2165279 | Lcy6g0403 | Lcy-Chr6:3814021 | 2.73E-44 | dispersed | |
Lcy1g0831 | Lcy-Chr1:7115428 | Lcy6g0403 | Lcy-Chr6:3814021 | 3.04E-34 | dispersed | |
Lcy6g0207 | Lcy-Chr6:1858196 | Lcy6g0403 | Lcy-Chr6:3814021 | 6.75E-35 | dispersed | |
Lcy6g0210 | Lcy-Chr6:1886860 | Lcy6g0403 | Lcy-Chr6:3814021 | 3.04E-36 | dispersed | |
Lcy6g0403 | Lcy-Chr6:3814021 | Lcy9g1539 | Lcy-Chr9:40485123 | 3.24E-26 | dispersed | |
Lcy6g0395 | Lcy-Chr6:3748462 | Lcy6g0403 | Lcy-Chr6:3814021 | 1.02E-26 | proximal | |
Lcy12g0427 | Lcy-Chr12:5212290 | Lcy6g0403 | Lcy-Chr6:3814021 | 4.83E-34 | transposed | |
Lcy1g0064 | Lcy-Chr1:527054 | Lcy6g0403 | Lcy-Chr6:3814021 | 4.69E-26 | transposed | |
Lcy1g0849 | Lcy-Chr1:7257480 | Lcy6g0403 | Lcy-Chr6:3814021 | 5.57E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20241 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0403 | K09264 | - | csv:101203098 | 415.616 |