Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0409 ATGGAAGGGAAGAATCCAAAAGTTATTGAAAACTCTGAAGGTGCTAGGACCACACCGTCAGTGGTTGCTTTCAATCAGAAAGGTGAACTACTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACAAATCCGACAAATACTGTATTTGGAACCAAACGTCTGATTGGTAGACGCTTTGATGACCCTCAGACACAGAAGGAAATGAAGATGGTACCATACAAAATAGTCAGAGCTCCAAATGGAGATGCATGGGTTGAAGCAAACGGACAGCAGTACTCACCGAGTCAGATTGGTGCCTTTGTTCTCACAAAGATGAAGGAAACTGCTGAGGCCTACCTTGGAAAGAGTGTGTCGAAGGCCGTGATTACTGTTCCAGCTTATTTCAATGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATTATCAATGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAACAACAAGGAGGGTCTCATTGCTGTTTTTGATCTTGGTGGTGGCACATTCGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGACACATTCTTGGGAGGGGAGGATTTTGACAATGCTCTACTGGACTTCCTTGTGAGCGAGTTCAAACGAACTGAGGGAATTGACCTTACCAAGGACAGGCTTGCCTTGCAGAGGCTTAGGGAGGCTGCAGAAAAGGCAAAGATTGAGCTATCATCTACATCACAGACTGAAATTAACCTGCCGTTTATCACTGCTGATGCAACTGGTGCAAAGCATCTGAACATCTCTTTGACCAGGTCGAAGTTTGAAAGCCTGGTTAATAACCTGATTGAAAGGACCAAGGCCCCATGCAAAAATTGTTTGAAGGATGCCAATATTTCTATCAAAGAGGTGGATGAAGTGCTTTTAGTTGGTGGAATGACTCGTGTACCTAAGGTGCAAGACGTTGTTACAGAAATTTTTGGAAAGAGCCCCAGCAAAGGAGTGAATCCTGATGAAGCAGTTGCCATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTTTTGGATGTTACCCCACTATCTCTCGGTATTGAGACACTTGGTGGTATCTTTACGAGGTTGATCAGTCGGAACACTACCATTCCAACTAAGAAGAGCCAGGTGTTCTCAACAGCAGCTGACAATCAGACCCAGGTCGGTATCAAGGTCTTGCAAGGTGAGAGAGAAATGGCTTCTGACAACAAGCTTCTAGGGGAGTTTGAGTTGGTTGGAATTCCTCCTGCCCCAAGAGGAATGCCTCAAATTGAGGTGACATTTGACATTGACGCCAATGGTATTGTTACCGTCTCTGCCAAGGACAAGTCCACTGGTAAAGAGCAGCAAATCACCATTCGATCTTCTGGAGGACTCTCAGACGACGAAATTGAGAAAATGGTCAAGGAAGCAGAGTTGCACGCCCAGAAGGATCAAGAGAGGAAAGCTCTTATTGATATCAGAAACAGTGCCGACACTACCATCTACAGCATAGAGAAGAGCTTGGGTGAATATCGGGAGAAAATACCAAGCGAGGTTGCCAAAGAAATTGAGGATGCAGTGGCAGACTTGAGGAAGGCAATGTCAGAAGATGACATTGAACAGATCAAGTCAAAACTCGATGCTGCCAACAAAGCCGTTTCCAAGATTGGGCAGCATATGGCTGGTGGTTCTGGTGGTGGTGCTGCTTCTGGAGGATCACAGGGTGGCGAACAAGCTTCCGAGGCCGAGTACGAAGAGGTGAAGAAATAA 1824 45.78 MEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTEGIDLTKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADATGAKHLNISLTRSKFESLVNNLIERTKAPCKNCLKDANISIKEVDEVLLVGGMTRVPKVQDVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSDDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMSEDDIEQIKSKLDAANKAVSKIGQHMAGGSGGGAASGGSQGGEQASEAEYEEVKK 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3876802 3881259 + Maker00002445 Lcy6g0409 634853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0409 607 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 483 582 IPR029048 -
Lcy6g0409 607 PANTHER HEAT SHOCK PROTEIN 70KDA 5 541 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0140662(InterPro)
Lcy6g0409 607 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 360 516 IPR029047 -
Lcy6g0409 607 Gene3D - 162 342 - -
Lcy6g0409 607 Pfam Hsp70 protein 1 578 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lcy6g0409 607 FunFam Chaperone protein DnaK HSP70 354 537 - -
Lcy6g0409 607 Hamap Chaperone protein DnaK [dnaK]. 1 605 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Lcy6g0409 607 CDD HSPA9-like_NBD 1 358 - -
Lcy6g0409 607 Gene3D - 1 355 - -
Lcy6g0409 607 FunFam Molecular chaperone DnaK 483 582 - -
Lcy6g0409 607 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 358 482 IPR029047 -
Lcy6g0409 607 SUPERFAMILY Actin-like ATPase domain 3 166 IPR043129 -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 120 140 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 178 188 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 36 44 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 364 383 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 310 326 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 341 361 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 445 461 - -
Lcy6g0409 607 PRINTS 70kDa heat shock protein signature 13 25 - -
Lcy6g0409 607 ProSitePatterns Heat shock hsp70 proteins family signature 3. 313 327 IPR018181 -
Lcy6g0409 607 Gene3D - 483 580 IPR029048 -
Lcy6g0409 607 FunFam Heat shock protein 9 49 100 - -
Lcy6g0409 607 Gene3D Actin; Chain A, domain 4 205 292 - -
Lcy6g0409 607 FunFam Molecular chaperone DnaK 1 168 - -
Lcy6g0409 607 ProSitePatterns Heat shock hsp70 proteins family signature 2. 172 185 IPR018181 -
Lcy6g0409 607 Coils Coil 228 255 - -
Lcy6g0409 607 FunFam Chaperone protein HscA homolog 169 226 - -
Lcy6g0409 607 FunFam Molecular chaperone DnaK 205 292 - -
Lcy6g0409 607 NCBIfam molecular chaperone DnaK 1 578 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Lcy6g0409 607 MobiDBLite consensus disorder prediction 575 607 - -
Lcy6g0409 607 Coils Coil 550 570 - -
Lcy6g0409 607 SUPERFAMILY Actin-like ATPase domain 167 358 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0728 Lcy-Chr10:21936009 Lcy6g0409 Lcy-Chr6:3876802 4.40E-220 dispersed
Lcy3g1987 Lcy-Chr3:46979478 Lcy6g0409 Lcy-Chr6:3876802 1.02E-171 dispersed
Lcy6g0409 Lcy-Chr6:3876802 Lcy9g1455 Lcy-Chr9:39587746 8.01E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0409 K04043 - csv:101216102 1118.22