Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0427 | ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTGACTCAAGTGTTGAACCAGTTAGAGATGGAGCGAAAGCGGGGTGAAGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAACGGCAATCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGTGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 657 | 49.92 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQFFPTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF | 218 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3994984 | 3995791 | - | Maker00002808 | Lcy6g0427 | 634871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0427 | 218 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | Coils | Coil | 138 | 165 | - | - | |
| Lcy6g0427 | 218 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | Coils | Coil | 93 | 120 | - | - | |
| Lcy6g0427 | 218 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | PANTHER | MADS BOX PROTEIN | 6 | 157 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy6g0427 | 218 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy6g0427 | 218 | Gene3D | - | 83 | 176 | - | - | |
| Lcy6g0427 | 218 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lcy6g0427 | 218 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g1750 | Lcy-Chr5:40125863 | Lcy6g0427 | Lcy-Chr6:3994984 | 8.07E-28 | dispersed | |
| Lcy6g0427 | Lcy-Chr6:3994984 | Lcy8g1617 | Lcy-Chr8:42750420 | 2.67E-14 | dispersed | |
| Lcy6g0427 | Lcy-Chr6:3994984 | Lcy8g0840 | Lcy-Chr8:30364545 | 3.35E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20242 | None | None | None | None | Lcy | TF |
Pathway information