Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0427 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTGACTCGAAACCCCCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTGACTCAAGTGTTGAACCAGTTAGAGATGGAGCGAAAGCGGGGTGAAGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAACGGCAATCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGTGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 657 49.92 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPQFFPTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3994984 3995791 - Maker00002808 Lcy6g0427 634871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0427 218 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 Coils Coil 138 165 - -
Lcy6g0427 218 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 Coils Coil 93 120 - -
Lcy6g0427 218 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy6g0427 218 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy6g0427 218 Gene3D - 83 176 - -
Lcy6g0427 218 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy6g0427 218 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1750 Lcy-Chr5:40125863 Lcy6g0427 Lcy-Chr6:3994984 8.07E-28 dispersed
Lcy6g0427 Lcy-Chr6:3994984 Lcy8g1617 Lcy-Chr8:42750420 2.67E-14 dispersed
Lcy6g0427 Lcy-Chr6:3994984 Lcy8g0840 Lcy-Chr8:30364545 3.35E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20242 None None None None Lcy TF