Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0441 ATGTCTCTCTCTCCTGACCATTCCGCTGCTTCCTCCTCCTCCTCCTCCGGTGCCGGTCGCCACCTCGCCGCCCACTTTCTCACTTCCACCACGGCGGACTACCCGATCTACGATGACTCCGCCATTTTCAGGCTTCTCCAATCGGAGCTCGACCACATGCCCCGCCGTGACTACGTTCGCCGGTGCCGTGACCGCTCGATCGACGTCACCGCCCGCCAGGACTCGATTAACTGGATCTTGAAGGTGCACGCGCATTACAATTTCAAACCGGTCACTGCGATTCTCTCCGTTAATTACTTCGATCGCTTCCTCTCCTCCAATTTCCTTCCGCGGCCGAATGGATGGCCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCGTTAGCGGCGAAAATGGAGGAGCCTCATGTCCCACTGCTTTTGGACCTCCAAATCTTCGAGCCTAAGTACGTTTTCGAGCCCAAAACGGTTCAGAGAATGGAGCTTTGGGTCATGTCTATTCTCAATTGGAGATTACGCGCCGTCACGCCTTTCGATTTCCTCCATCACTTCATCTCCGATCTTCCTTCTTCTTCCGCCGCAGACGACGGCGGCGATGGCGACGGTGACGACTGTCATCGCCTCTTCTCAACTTCCTCTGATCTCATTCTCAGCACCACACGCGTGATCGATTTCTTGGGGTTTCCGCCGTCCGCCATTGCTGCCGCCGCCGTTCTTTGCGCCGCTGGTGAGAGGTTCGATTCCCCGGCGGTGTGTAGCCATTTTCTTGCGGCGAACAGAGTCGTAAGTGTTAATTCAATGTTTCTGTGTGAAATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACGTGATCGACACGTGTCCGGCCGGCCTCCGAAAACTGCGGAGCGGAGGAGCCGAGCAGCCGGCGCCGCCGAGTCCAGTCGGCGTACTCGACGCGGCTGCATGCGGTAGCTGTGACACGCGCTTGGACAATCCCGGCTCCACCAGCCACGAAGCCGCCGCCGTCGAGCCACCGACTAAACGGCTGCGATCCTCTGCGCCGGATGTACAGGAGCAGTAG 1062 57.82 MSLSPDHSAASSSSSSGAGRHLAAHFLTSTTADYPIYDDSAIFRLLQSELDHMPRRDYVRRCRDRSIDVTARQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSSNFLPRPNGWPFQLLSVACLSLAAKMEEPHVPLLLDLQIFEPKYVFEPKTVQRMELWVMSILNWRLRAVTPFDFLHHFISDLPSSSAADDGGDGDGDDCHRLFSTSSDLILSTTRVIDFLGFPPSAIAAAAVLCAAGERFDSPAVCSHFLAANRVVSVNSMFLCEMVRSCHQLMEEYVIDTCPAGLRKLRSGGAEQPAPPSPVGVLDAAACGSCDTRLDNPGSTSHEAAAVEPPTKRLRSSAPDVQEQ 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4117844 4120889 - Maker00002401 Lcy6g0441 634885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0441 353 SUPERFAMILY Cyclin-like 33 171 IPR036915 -
Lcy6g0441 353 ProSitePatterns Cyclins signature. 72 103 IPR048258 -
Lcy6g0441 353 Pfam Cyclin, C-terminal domain 174 249 IPR004367 -
Lcy6g0441 353 Pfam Cyclin, N-terminal domain 45 172 IPR006671 -
Lcy6g0441 353 CDD CYCLIN_AtCycD-like_rpt1 71 169 - -
Lcy6g0441 353 PANTHER CYCLINS 37 279 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy6g0441 353 FunFam D2/4-type cyclin 55 172 - -
Lcy6g0441 353 SUPERFAMILY Cyclin-like 156 283 IPR036915 -
Lcy6g0441 353 SMART Cyclin_C_2 174 339 IPR004367 -
Lcy6g0441 353 Gene3D - 44 269 - -
Lcy6g0441 353 Gene3D - 55 172 - -
Lcy6g0441 353 SMART cyclin_7 77 165 IPR013763 -
Lcy6g0441 353 MobiDBLite consensus disorder prediction 322 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1500 Lcy-Chr13:33656000 Lcy6g0441 Lcy-Chr6:4117844 5.68E-53 dispersed
Lcy6g0441 Lcy-Chr6:4117844 Lcy7g0207 Lcy-Chr7:1819009 4.77E-63 dispersed
Lcy6g0441 Lcy-Chr6:4117844 Lcy1g0824 Lcy-Chr1:7022381 4.82E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0441 K18810 - csv:101219121 503.056