Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0444 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAGGAAGAGGCAGCGCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAAGACCCGGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAAAGATTGCATGCTCCTAAAAAAGATGAGAGCATTGTGGCTCAAAGTGTTTCTGTCCAAAGTGAAGATGAAGTGCCAGAAGCTAAGTCTGTTTCCCTTTCCACGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAGGAAGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGGGAACGTGCTGGCTCTAGTAAGTCAAACATTGCTTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACTGCTAGTGGTAAACTGGTCAAGTCTGCTGCCATTACTTCCCTCTTAGCCCATTCTTCGGGATCCTTCTTATTTCTTATGGAGTTCCTTTTTGTCCAGGTTAAACGGAAATATAAGCTTGCTCCAGCGTTGTCTTCTTCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTACTCTTGCAAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTCGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCCGAAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGACGAAATCTCCCGAAGATGAGGGGTTATGGAGCTGTTCTTAAATGGATCAACATGTTTGGCGCTTGCTATCGGGTAAGGCATTATAGGCAACCTCCCCAGCCATTTTCAATTGCTTTTGGGGCAATTCGAACAACCGGGTCGTGCCTGACTAGAAGACTGGATATCTAA 1182 44.84 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDESIVAQSVSVQSEDEVPEAKSVSLSTDIKQIAGPKRSNVRKEEEEEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERAGSSKSNIASYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKSAAITSLLAHSSGSFLFLMEFLFVQVKRKYKLAPALSSSERRGSMLLLDDHHRASIRADKDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMRGYGAVLKWINMFGACYRVRHYRQPPQPFSIAFGAIRTTGSCLTRRLDI 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4154164 4161156 + Maker00002786 Lcy6g0444 634888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0444 393 PANTHER SINGLE MYB HISTONE 4 1 342 IPR044597 GO:0003691(InterPro)
Lcy6g0444 393 FunFam Telomere repeat-binding factor 1 2 58 - -
Lcy6g0444 393 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lcy6g0444 393 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lcy6g0444 393 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 FunFam Telomere repeat-binding factor 1 8 85 - -
Lcy6g0444 393 CDD SANT_TRF 6 56 - -
Lcy6g0444 393 SMART sant 4 59 IPR001005 -
Lcy6g0444 393 Gene3D - 145 221 IPR036388 -
Lcy6g0444 393 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lcy6g0444 393 Gene3D - 2 59 - -
Lcy6g0444 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lcy6g0444 393 Coils Coil 118 141 - -
Lcy6g0444 393 MobiDBLite consensus disorder prediction 115 134 - -
Lcy6g0444 393 SUPERFAMILY Winged helix DNA-binding domain 145 206 IPR036390 -
Lcy6g0444 393 Pfam linker histone H1 and H5 family 150 205 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 223 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 Coils Coil 291 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2148 Lcy-Chr12:42775041 Lcy6g0444 Lcy-Chr6:4154164 5.57E-06 dispersed
Lcy6g0444 Lcy-Chr6:4154164 Lcy13g0625 Lcy-Chr13:8336299 6.15E-06 dispersed
Lcy13g0135 Lcy-Chr13:1304067 Lcy6g0444 Lcy-Chr6:4154164 4.16E-30 transposed
Lcy1g0906 Lcy-Chr1:7919365 Lcy6g0444 Lcy-Chr6:4154164 1.75E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20243 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0444 K09422 - csv:101218411 442.58