Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0444 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAGGAAGAGGCAGCGCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAAGACCCGGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAAAGATTGCATGCTCCTAAAAAAGATGAGAGCATTGTGGCTCAAAGTGTTTCTGTCCAAAGTGAAGATGAAGTGCCAGAAGCTAAGTCTGTTTCCCTTTCCACGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAGGAAGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGGGAACGTGCTGGCTCTAGTAAGTCAAACATTGCTTCATATATAGAGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACTGCTAGTGGTAAACTGGTCAAGTCTGCTGCCATTACTTCCCTCTTAGCCCATTCTTCGGGATCCTTCTTATTTCTTATGGAGTTCCTTTTTGTCCAGGTTAAACGGAAATATAAGCTTGCTCCAGCGTTGTCTTCTTCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTACTCTTGCAAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTCGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCCGAAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGACGAAATCTCCCGAAGATGAGGGGTTATGGAGCTGTTCTTAAATGGATCAACATGTTTGGCGCTTGCTATCGGGTAAGGCATTATAGGCAACCTCCCCAGCCATTTTCAATTGCTTTTGGGGCAATTCGAACAACCGGGTCGTGCCTGACTAGAAGACTGGATATCTAA 1182 44.84 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDESIVAQSVSVQSEDEVPEAKSVSLSTDIKQIAGPKRSNVRKEEEEEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERAGSSKSNIASYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKSAAITSLLAHSSGSFLFLMEFLFVQVKRKYKLAPALSSSERRGSMLLLDDHHRASIRADKDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMRGYGAVLKWINMFGACYRVRHYRQPPQPFSIAFGAIRTTGSCLTRRLDI 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4154164 4161156 + Maker00002786 Lcy6g0444 634888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0444 393 PANTHER SINGLE MYB HISTONE 4 1 342 IPR044597 GO:0003691(InterPro)
Lcy6g0444 393 FunFam Telomere repeat-binding factor 1 2 58 - -
Lcy6g0444 393 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lcy6g0444 393 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lcy6g0444 393 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 FunFam Telomere repeat-binding factor 1 8 85 - -
Lcy6g0444 393 CDD SANT_TRF 6 56 - -
Lcy6g0444 393 SMART sant 4 59 IPR001005 -
Lcy6g0444 393 Gene3D - 145 221 IPR036388 -
Lcy6g0444 393 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lcy6g0444 393 Gene3D - 2 59 - -
Lcy6g0444 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lcy6g0444 393 Coils Coil 118 141 - -
Lcy6g0444 393 MobiDBLite consensus disorder prediction 115 134 - -
Lcy6g0444 393 SUPERFAMILY Winged helix DNA-binding domain 145 206 IPR036390 -
Lcy6g0444 393 Pfam linker histone H1 and H5 family 150 205 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 223 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy6g0444 393 Coils Coil 291 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0444 K09422 - - csv:101218411 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2148 Lcy-Chr12:42775041 Lcy6g0444 Lcy-Chr6:4154164 5.57E-06 dispersed
Lcy6g0444 Lcy-Chr6:4154164 Lcy13g0625 Lcy-Chr13:8336299 6.15E-06 dispersed
Lcy13g0135 Lcy-Chr13:1304067 Lcy6g0444 Lcy-Chr6:4154164 4.16E-30 transposed
Lcy1g0906 Lcy-Chr1:7919365 Lcy6g0444 Lcy-Chr6:4154164 1.75E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0444 . 1 344 Single Myb Histone (SMH) Gene Family AT1G49950 54.6 2.0e-67 253.4
Lcy13g0135 . 1 280 Single Myb Histone (SMH) Gene Family AT1G17520 50.2 4.3e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20243 None None None None Lcy TF