Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0477 ATGGAACCTATAGGAGCCATTTCAGAAAGAGAATGGATCTCTCTCAGTGGAACATATACAGCTGAGGAATCTGATTTCATGGCTAATTTGCTCAATAACTATTGTCTTCCAAATGAGCTAAGTTCAGGTTTGAGCTTGGAAATCCCTTCTGCTTATTGGGCTGCCAATGAACAACCACCATCCTTGACCATGGCTGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTACTTCTGATTCTTCCAATATTTATGGCCTTCCACAAGGCAACAACAATCATCATTACACCTTGAGTGATTCCCACCCTCTTTGGCTTCCCAATGGTGCCTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCGGGAATGCTGATCGCTTGGACGACAACGGTTTGAGTCGAAAAACGAAGCAATGCAGGCTGCAACACTCCCCTGCTGACCCTGCTGCTGCACTTGCTGTCAATGGGAAGAGCTTGCAACCGAAAAGGAGAGCCGAGGCGACAGCGGAAGAAGCTATTAGAGACGAGAAAGTTGCACTGATGTCGGTCGACGACATTTCGAAGAAGCGATCGCTGAGTTTGCTTGATGTCGAAAAGACGAAGAGGAGCGCGAGGCCACGGAAGAGCCCGAAGCTTGGTTCGGCTAGCTGCAATGAAGAGGATCAGATTGTTAGTCCAAATGGGCAGTGCACAAGCAGCTTCAGCTCTGAAGATGACTGTAATGAGCCTCAAGAAATCAACAATGGAGTCAGTTCTAGCTCAAGCTCAAAAGGGTCTGGAACTTTGACCTCAAATGGAAAGCCAAGAGCCAGCAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATCTTACAGAGCCTCGTCCCGAACGGCACGAAGGTTGACATCAGTACAATGCTTGAAGAAGCAGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCTGATGATCTGTGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAATAG 1089 46.1 MEPIGAISEREWISLSGTYTAEESDFMANLLNNYCLPNELSSGLSLEIPSAYWAANEQPPSLTMAAMDEPSYYSSDATSDSSNIYGLPQGNNNHHYTLSDSHPLWLPNGASLSLDFSMEDVGNADRLDDNGLSRKTKQCRLQHSPADPAAALAVNGKSLQPKRRAEATAEEAIRDEKVALMSVDDISKKRSLSLLDVEKTKRSARPRKSPKLGSASCNEEDQIVSPNGQCTSSFSSEDDCNEPQEINNGVSSSSSSKGSGTLTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4499006 4500456 - Maker00002400 Lcy6g0477 634921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0477 362 MobiDBLite consensus disorder prediction 197 284 - -
Lcy6g0477 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 339 IPR036638 GO:0046983(InterPro)
Lcy6g0477 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983(InterPro)
Lcy6g0477 362 Pfam Helix-loop-helix DNA-binding domain 284 324 IPR011598 GO:0046983(InterPro)
Lcy6g0477 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 346 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy6g0477 362 SMART finulus 280 329 IPR011598 GO:0046983(InterPro)
Lcy6g0477 362 MobiDBLite consensus disorder prediction 215 278 - -
Lcy6g0477 362 Gene3D - 276 332 IPR036638 GO:0046983(InterPro)
Lcy6g0477 362 FunFam Basic helix-loop-helix transcription factor 275 332 - -
Lcy6g0477 362 CDD bHLH_AtIND_like 275 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0477 Lcy-Chr6:4499006 Lcy8g0681 Lcy-Chr8:24954688 5.41E-14 dispersed
Lcy10g1145 Lcy-Chr10:33871325 Lcy6g0477 Lcy-Chr6:4499006 3.40E-21 transposed
Lcy13g2130 Lcy-Chr13:40209447 Lcy6g0477 Lcy-Chr6:4499006 5.86E-42 wgd
Lcy4g0174 Lcy-Chr4:2239805 Lcy6g0477 Lcy-Chr6:4499006 1.53E-35 wgd
Lcy6g0477 Lcy-Chr6:4499006 Lcy9g2042 Lcy-Chr9:45292387 8.75E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20244 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0477 - - - 0.0