Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0498 ATGATGATACGGAAGATTTGGTGTATACGCGACACAGGTGATCAGAACCACTCCGACTTCACCAACCCCAAAACCCCATTGCTGAGATGTCGTCTTCATCGATCTGCCGTTTGCTTTCCTTCCTCTCTCGCTCTGTATTCTATTTATCTCCTTCCATTCCACTCCCATTTCACCAACTCAAATCTTCCTTCTCTCTCTCTAACTTCTTTTCCCAGATTCTTTCAGCTTTCTTCGTTCGAAATGGGCAGCATTCAAGCGGACAGAACCGTCACGGGATTGGCTGCGAAAGACCCATCTGGGATTCTCTCTCCCTACACTTATACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTAATCTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATGAAAAATGATCTGGGCATGTCCAATTACCCCATGGTTCCTGGACACGAGGTGGTCGGAGAAGTGTTGGAGGTTGGATCGGAAGTCGATCGGTTCAGAGCAGGGGAGTTGGTCGGAGTTGGGTGTATCGTTGGATCCTGTTCGAGTTGCAGTCCTTGCAATTCTGATAAGGAGCAGTATTGTAACAAGAGAATCTGGAGCTATAACGATGTTTATCACGACGGCCGCCCCACCCAAGGCGGGTTCTCCTCTGCCATGGTCGTCCACCAAAAGTTTGTGGTGAAAATCCCAGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTGCTGTGCGCCGGAGTGACGGTGTACAGTCCGCTGAGCCACTTTGGGCTGAAACAGAGTGGGCTCAGAGGAGGAATTTTGGGGCTGGGCGGCGTCGGGCACATGGGTGTGAAAGTGGCGAAGGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCTCTGGAGCATCTCGGCGCCGACGAGTACTTGGTCAGCTCCGACGCCGCTCAGATGGGACGAGCCATTGACTCGCTCGATTACATCATCGATACAGTCCCTGTCAATCATCCTCTCGAGCCGTATCTCTCGCTCCTCAAACTCGACGGCAAATTGATCTTGATGGGTGTCATTAATACTCCATTGCAATTCGTTTCCCCAGTCCTTATGCTCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTGTTGGATTTCTTCAAAGAGAAGGAGCTGACCTCCATGATCGAAGTGATAAAGCTAGATTACATAAACAAGGCCTTCGAGAGGTTGGAGAAGAACGACGTTAGATACAGGTTCGTCGTCGACGTCGCCGGAAGTAAGTTGCCTCAGTGA 1314 51.29 MMIRKIWCIRDTGDQNHSDFTNPKTPLLRCRLHRSAVCFPSSLALYSIYLLPFHSHFTNSNLPSLSLTSFPRFFQLSSFEMGSIQADRTVTGLAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQMKNDLGMSNYPMVPGHEVVGEVLEVGSEVDRFRAGELVGVGCIVGSCSSCSPCNSDKEQYCNKRIWSYNDVYHDGRPTQGGFSSAMVVHQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDAAQMGRAIDSLDYIIDTVPVNHPLEPYLSLLKLDGKLILMGVINTPLQFVSPVLMLGRKTITGSFIGSMTETQEVLDFFKEKELTSMIEVIKLDYINKAFERLEKNDVRYRFVVDVAGSKLPQ 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4673450 4675410 + Maker00002591 Lcy6g0498 634942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0498 437 Gene3D - 244 400 - -
Lcy6g0498 437 Gene3D - 94 430 - -
Lcy6g0498 437 FunFam Cinnamyl alcohol dehydrogenase 244 400 - -
Lcy6g0498 437 Pfam Zinc-binding dehydrogenase 271 394 IPR013149 -
Lcy6g0498 437 SMART PKS_ER_names_mod 100 428 IPR020843 GO:0016491(InterPro)
Lcy6g0498 437 PANTHER ALDEHYDE REDUCTASE 89 432 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy6g0498 437 FunFam Putative cinnamyl alcohol dehydrogenase 6 401 430 - -
Lcy6g0498 437 SUPERFAMILY GroES-like 97 261 IPR011032 -
Lcy6g0498 437 CDD CAD1 91 429 IPR047109 GO:0016616(InterPro)
Lcy6g0498 437 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 148 162 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lcy6g0498 437 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 233 398 IPR036291 -
Lcy6g0498 437 FunFam probable cinnamyl alcohol dehydrogenase 93 250 - -
Lcy6g0498 437 Pfam Alcohol dehydrogenase GroES-like domain 113 231 IPR013154 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0498 Lcy-Chr6:4673450 Lcy8g0233 Lcy-Chr8:6209097 2.94E-124 dispersed
Lcy4g0213 Lcy-Chr4:2669396 Lcy6g0498 Lcy-Chr6:4673450 3.39E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0498 K00083 - csv:101222395 642.884