Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0502 ATGAGCTTCCAAACCAGAAATCTCGCTCTGTTTTGGAGCTTCACTTTCTTCTTCCTTCTTCCTTTTCCATCTCTGGCTCTCAACGGCGATGGCACCCTCTTGATTTCTCTCAAACGCTCCATTCTCGGTGATCCTTTGTCCGTTTTGGCTAATTGGAACTTTAACGATGTGACCCCCTGTTCTTGGCGTGGAGTCACCTGCACCGACCTTCAAAGCTACGGCGGCGGCTGGTCGGATTCCTTCAGAGTCACTGCCGTGTCCCTCCCCGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTGCCGATTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCGAACAATGTCATTTCCGGCGAGCTGCCGGCGGCTATTGGGGGGTTGAAGAGTCTGCAGGTTTTGAATCTGTCCGATAATGCGTTGGCTGGGAAAGTGCCGGGAAATCTCACTGCTCTGAAGAATCTCACCGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAAGTTCCCGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCGTCTAATTTGCTCAATGGGTCTCTGCCGGCGGATTTTGGTGGGGAGAAACTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCTGATTCCGTTGGAGTTTGCCAAGAGGATTCCGGCGAATGCGACGATGGATTTCTCTTTCAACAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCGTTCGCTGGAAATGAAGATCTCTGCGGGAAGCCATTGAAGCACCTCTGTTCGATTCCTTCTTCACTCACAACTCCTCCAAATGTTTCCGAAACTTCATCTTCTTCTCCGGCTATAGCCGCCATACCCAAAACAATCGGCTCTGTTCCGGCGACACAGTCCCCCGGAGGTCCAAACGGGACACAAAATCCTCAGCCACAAAACACCATGAAACCCATCACAATAGCCGCCATCGCCGTCGGAGACCTGGCCGGAGTCGCCATTCTCGCCGTCGTCATTCTCTACGTCTACCATCACCGGAAACGGAAAGACCCCAACTTCAAATCCCCTAAATCCGCCGAGAAGAAGCCGCCGATTGGCTCAGAAAAGAACCTCCAAACTAATCAGAAAAAACCCTCGTCGGTGTTGTTCTGTTTGGCCAACAAAGGCGAAGAGACATCGGAGGCGACGAGTTCCTCCGACGGCGAAGAACAGAGAGACAAACCCGACACAACCCACGGCGGAGAGAACAGAGAGAGTAAGAAAAACGGCGTTTTGGTGACGGTGGACGGAGAAACGGAGCTCGAATTGGAGACTCTGTTAAAAGCGTCGGCGTACATACTCGGAGCGAGCGGCGGGAGCATTGTGTACAAGGCGGTGCTGGAGGACGGCACGGCGTTCGCCGTCAGAAGGATCGGCGACGGCGGCGTTGAGAGATTGAGGGATTTCGAGGCCCAAGTGAGAGCCATTGCTAAGCTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAAAAGCTCATCATCTATGACTACGTCTCCAATGGCTGCCTTGCAACCTCCATTCACAGAAAACCGAGTTCGTCGTCTTCTTCCCAAAGCCACCTATCATTCGAAGTCCGACTGAAAATCGCCAGAGGAATCGCCCGAGGACTGACCTTCATCCACGACAAGAAGCAAGTCCATGGCAACCTCAAGCCTTCCAACATCCTCCTCAACGCTGACATGGAGCCTTTAATCACGGATCTCGGCCTCGACAAGCTCCTCTCCGGCGGCTCCAAAATCGCCCTCGCCTCCGGTTCGGCCCGAAACTTCGGCAGCCACAGATCCACGCCCAATCGCGAGCACCAAGACGGAAACACCGGCGGCGGAGGCGCAATTAGCGTCGGAAGCCCCGCCGTGAGCCAGGGATCGGCGTACCAGGCGCCGGAATCGCTGAAGAATCTGAAACCTAGCCCTAAATGGGACGTGTACTCGTTTGGGGTGATTCTACTGGAGCTCGTGAGCGGGAGATTGGTGACGGAGAGGGAGGTGAATCAATGGAGCGGCGTGGAGGATGAGGGGCGGATGAAGAAGATGATCGATTTGACGATTCGAGGGGAAGTGGAAGGGAAAGAGGAGGCGGCGGTGGGGATTTTGAGATTAGGGTTTAGCTGTGTTTGTTTTGTGCCTCAAAGGAGACCGAGCATGAAAGAAGCACTCCAAATGCTTGACAAAATCTCTTCCACCATTTCTTCTTGA 2337 52.29 MSFQTRNLALFWSFTFFFLLPFPSLALNGDGTLLISLKRSILGDPLSVLANWNFNDVTPCSWRGVTCTDLQSYGGGWSDSFRVTAVSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPISIFNASELQILSLSNNVISGELPAAIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGEVPGNFSSVEVLDLSSNLLNGSLPADFGGEKLRYLNFSYNKISSLIPLEFAKRIPANATMDFSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSETSSSSPAIAAIPKTIGSVPATQSPGGPNGTQNPQPQNTMKPITIAAIAVGDLAGVAILAVVILYVYHHRKRKDPNFKSPKSAEKKPPIGSEKNLQTNQKKPSSVLFCLANKGEETSEATSSSDGEEQRDKPDTTHGGENRESKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDGGVERLRDFEAQVRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLATSIHRKPSSSSSSQSHLSFEVRLKIARGIARGLTFIHDKKQVHGNLKPSNILLNADMEPLITDLGLDKLLSGGSKIALASGSARNFGSHRSTPNREHQDGNTGGGGAISVGSPAVSQGSAYQAPESLKNLKPSPKWDVYSFGVILLELVSGRLVTEREVNQWSGVEDEGRMKKMIDLTIRGEVEGKEEAAVGILRLGFSCVCFVPQRRPSMKEALQMLDKISSTISS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4699956 4705290 + Maker00002797 Lcy6g0502 634946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0502 778 ProSiteProfiles Protein kinase domain profile. 469 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0502 778 MobiDBLite consensus disorder prediction 321 342 - -
Lcy6g0502 778 SUPERFAMILY Protein kinase-like (PK-like) 474 772 IPR011009 -
Lcy6g0502 778 Pfam Protein kinase domain 475 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0502 778 MobiDBLite consensus disorder prediction 417 452 - -
Lcy6g0502 778 SUPERFAMILY L domain-like 30 289 - -
Lcy6g0502 778 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515(InterPro)
Lcy6g0502 778 Gene3D Ribonuclease Inhibitor 28 195 IPR032675 -
Lcy6g0502 778 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Lcy6g0502 778 FunFam Leucine-rich repeat receptor-like protein kinase 199 293 - -
Lcy6g0502 778 MobiDBLite consensus disorder prediction 634 660 - -
Lcy6g0502 778 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 27 192 - -
Lcy6g0502 778 Gene3D Ribonuclease Inhibitor 196 293 IPR032675 -
Lcy6g0502 778 Gene3D Phosphorylase Kinase; domain 1 438 544 - -
Lcy6g0502 778 Gene3D Transferase(Phosphotransferase) domain 1 545 777 - -
Lcy6g0502 778 PANTHER OS05G0588300 PROTEIN 149 774 IPR050994 -
Lcy6g0502 778 MobiDBLite consensus disorder prediction 426 452 - -
Lcy6g0502 778 ProSiteProfiles Leucine-rich repeat profile. 222 243 IPR001611 GO:0005515(InterPro)
Lcy6g0502 778 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515(InterPro)
Lcy6g0502 778 Pfam Leucine Rich Repeat 222 242 IPR001611 GO:0005515(InterPro)
Lcy6g0502 778 MobiDBLite consensus disorder prediction 377 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0502 Lcy-Chr6:4699956 Lcy7g0496 Lcy-Chr7:4404296 1.81E-81 dispersed
Lcy6g0502 Lcy-Chr6:4699956 Lcy8g0890 Lcy-Chr8:32132780 1.69E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66012 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0502 - - - 0.0