Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0511 | ATGGCCGCTCAGGTTCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCGGCGGCGAATGGTGGTGCCAACCAGTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGATATTTTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACTCCTCTAAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCCGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTGGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTACAATTTGACAATGAGGAATCTGCTCTGAAAGCTATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTGCTGTTGACAAATCCAAATTTAACAATGTATTTGTCAAGAATCTTGCCGAGACAACCACTGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTGGTGATGAGGGATGCCGATGGAAAATCAAAATGCTTTGGATTTGTAAATTTTGAAAATGCTGATGATGCTGCTGGGGCTGTTGATGCCCTTAATGGAAAGGTAATTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAGCATCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGACAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTTCGTATGGTACTATCACCTCATGCAAGGTCATGCGTGATCCCAACGGTATAAGCAGAGGTTCTGGTTTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAGAGGAAAGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCGATGGCTGCTTCAGTTGCCCCTCGAATGCCATTATATCCCCCTGGTGGTCCGGGCATCGGACAGCAATTGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGCCCAATGCCAAATTTCTTTGTCCCGATGGTTCAGCAGGGCCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGAATGTTTTCTGTTCCATATGACATGGGAGGTATGCCATTGCGTGATGCAGCAATTTCTCAACCTATCCCAATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTCGAGTCCCCGGAGGCATTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCCGCAGCTCAGCAAGCTGGCAATGCAGCCGATCAGCTAGGCTCTCTGTCACTGAACGACAACCTCGTGTCGTGA | 1959 | 46.3 | MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKSKFNNVFVKNLAETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENADDAAGAVDALNGKVIDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFASYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPLYPPGGPGIGQQLFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAISQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQAGNAADQLGSLSLNDNLVS | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4781282 | 4786418 | + | Maker00002422 | Lcy6g0511 | 634955 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0511 | 652 | SMART | rrm1_1 | 31 | 104 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm1_1 | 210 | 282 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm1_1 | 313 | 385 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | CDD | RRM4_I_PABPs | 311 | 389 | - | - | |
| Lcy6g0511 | 652 | Gene3D | - | 549 | 630 | - | - | |
| Lcy6g0511 | 652 | Gene3D | - | 297 | 398 | IPR012677 | - | |
| Lcy6g0511 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 209 | 393 | IPR035979 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 553 | 630 | IPR002004 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | FunFam | Polyadenylate-binding protein | 295 | 400 | - | - | |
| Lcy6g0511 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 108 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | Pfam | RNA recognition motif | 211 | 279 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | Pfam | RNA recognition motif | 314 | 382 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | Pfam | RNA recognition motif | 32 | 102 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | Pfam | RNA recognition motif | 120 | 188 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | FunFam | Polyadenylate-binding protein | 549 | 631 | - | - | |
| Lcy6g0511 | 652 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 31 | 626 | IPR006515 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 286 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | PANTHER | RNA BINDING PROTEIN | 26 | 211 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Lcy6g0511 | 652 | MobiDBLite | consensus disorder prediction | 474 | 495 | - | - | |
| Lcy6g0511 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 199 | IPR035979 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | Gene3D | - | 199 | 296 | IPR012677 | - | |
| Lcy6g0511 | 652 | Gene3D | - | 1 | 118 | IPR012677 | - | |
| Lcy6g0511 | 652 | SMART | poly_2 | 565 | 628 | IPR002004 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 312 | 389 | IPR000504 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | FunFam | Polyadenylate-binding protein | 17 | 115 | - | - | |
| Lcy6g0511 | 652 | FunFam | Polyadenylate-binding protein | 116 | 199 | - | - | |
| Lcy6g0511 | 652 | SMART | rrm2_1 | 210 | 282 | IPR003954 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm2_1 | 31 | 104 | IPR003954 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm2_1 | 313 | 385 | IPR003954 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | SMART | rrm2_1 | 119 | 191 | IPR003954 | GO:0003676(InterPro) | |
| Lcy6g0511 | 652 | SUPERFAMILY | PABC (PABP) domain | 496 | 645 | IPR036053 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | CDD | RRM1_I_PABPs | 31 | 110 | IPR034364 | - | |
| Lcy6g0511 | 652 | Gene3D | - | 119 | 198 | IPR012677 | - | |
| Lcy6g0511 | 652 | Pfam | Poly-adenylate binding protein, unique domain | 560 | 625 | IPR002004 | GO:0003723(InterPro) | |
| Lcy6g0511 | 652 | FunFam | Polyadenylate-binding protein | 200 | 294 | - | - | |
| Lcy6g0511 | 652 | CDD | RRM2_I_PABPs | 116 | 192 | IPR045305 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1608 | Lcy-Chr10:40491095 | Lcy6g0511 | Lcy-Chr6:4781282 | 1.28E-235 | dispersed | |
| Lcy11g1268 | Lcy-Chr11:35900441 | Lcy6g0511 | Lcy-Chr6:4781282 | 1.69E-30 | dispersed | |
| Lcy5g0349 | Lcy-Chr5:3516867 | Lcy6g0511 | Lcy-Chr6:4781282 | 4.73E-149 | dispersed | |
| Lcy6g0511 | Lcy-Chr6:4781282 | Lcy8g1046 | Lcy-Chr8:36150793 | 8.13E-12 | dispersed | |
| Lcy12g0863 | Lcy-Chr12:11984742 | Lcy6g0511 | Lcy-Chr6:4781282 | 8.50E-07 | transposed | |
| Lcy3g1131 | Lcy-Chr3:36332809 | Lcy6g0511 | Lcy-Chr6:4781282 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g0511 | K13126 | - | csv:101219802 | 1194.49 |