Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0515 ATGCGCGACCCGGTTACGGTCAGCACTGGTCAGACCTACGACCGCTCCAGTATTGAGTCATGGGTGGCCACCGGCAACACCACCTGTCCGGTCACTAGGGCTCCGCTCACCGACTTCACGCTCATCCCCAACCATACGCTGCGACGCCTCATTCAGGATTGGTGCGTTGCAAACCGCTCTTATGGCGTCGAGCGGATTCCGACTCCGAAGCAACCGGCCGATCCGTCTTTGGTTCGGTCTCTGCTTGCTCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCCAGAATCTCGGCTCTGCGGCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCGGTGATTTCCTCGCTCAACGCTCGTGAAATTCTTCTTGATATTGTGTTTTCGAATTTGGATTTGGATTTGGATTTGGATTTGGATTCGGATTCGGTTTCCCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTGTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATTGTGATTGCTGGAACTCGAGCTTCGGAGCTTCGAGGTCAAATTTGCGCTATCGATGAATTGTTCGAAGGCGTGGTTGAGATTCTCAGAGATCCAACGGCGTATCCGCGAGCGCTCAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTCTGGTGAAACAGACCAGGCACAAGGCGGTTTCCGCAGGCGCCGCCGAGATTCTCGTCGACAGATTCCCCGATTTGGAGAAATACGACGCGGAACGAGCCCTAGCGACGATCGAACTCATATGCAGAATTCCGGCCGGTTGCGACGCGTTTGCCGCTCACGCGCTCACCGTTCCTCTGTTAGTGAAAGTCATTCTGAAGATCTCGGATAGAGCGACGGAATCGGCGGTGGGAGCTCTGGTGTCGCTGTGCTCGGCGTCGGAGGAGAACCGGCGGGAGGCGGTGGCGGCGGGGATTTTTACACAGTTGTTGTTGCTGGTGCAAAGCGATTGTACGGACCGCGTTAAGCGGAAAACGCAGGTGCTGCTGAAGCTTCTTCGGGATTCATGGCCGCAAGATTCCGTCGGAAATTCCGACGACTATGCTTGCAGTGAAATTGTGGTGCCGTTTTGTTAA 1206 54.39 MRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPADPSLVRSLLAQASSKSSGSSSRISALRRLKGLARDSDKNRSVISSLNAREILLDIVFSNLDLDLDLDLDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEILVDRFPDLEKYDAERALATIELICRIPAGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTDRVKRKTQVLLKLLRDSWPQDSVGNSDDYACSEIVVPFC 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4812599 4813804 - Maker00002707 Lcy6g0515 634959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0515 401 Gene3D - 276 377 IPR011989 -
Lcy6g0515 401 PANTHER WDSAM1 PROTEIN 1 383 IPR045185 GO:0061630(InterPro)
Lcy6g0515 401 SMART Ubox_2 1 54 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy6g0515 401 CDD RING-Ubox_PUB 1 41 IPR045210 -
Lcy6g0515 401 Gene3D - 64 275 IPR011989 -
Lcy6g0515 401 SUPERFAMILY ARM repeat 78 376 IPR016024 -
Lcy6g0515 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Lcy6g0515 401 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy6g0515 401 Pfam U-box domain 1 59 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy6g0515 401 SUPERFAMILY RING/U-box 1 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2147 Lcy-Chr13:40360378 Lcy6g0515 Lcy-Chr6:4812599 3.51E-34 dispersed
Lcy6g0515 Lcy-Chr6:4812599 Lcy8g0142 Lcy-Chr8:3519511 5.42E-41 dispersed
Lcy6g0515 Lcy-Chr6:4812599 Lcy7g1126 Lcy-Chr7:12510849 8.39E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0515 - - - 0.0