Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0518 ATGGCGGCGACAGCAGTGAGTAGAGCTTTGTTTCTGTTGGGGTTTCTTCTATTTCTTCAAATGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGCTGCCTCTATTTGCTCTGACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCGAATGCAACAGGTGAACTGGGAGTTTCTTCAAACTTATCTAACATTTGCCTGCAATCAATATTTCAAACCATGGGACTGTATGGAGTTCCTAGAAATGCCACGGCTTTCTGTGGGGTTGGAACAAAAATTCCTGTGAACTACGCATGTAGAGGCCGAGAAACCGTCACACAGATGCTAGAATCTCCAAAGTTTCCTAATGTCAGTGAAAATTGCAAATTGCCGCTCTCGGAGGAGAGTACCTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTTCGCAATCTGATTGGAAGAGAAGATAATATAACATTAAATACTTGTCGCGACGCAACGTTTGTTGCACTTGCTAGCCAACTTGATCCTCCTTCAGTCATTGATCTTGCGACCTGCTTCTTTGGAGTTCAAGGCCTTAACAGGCCTCCAGCTCCATCCCCATCTTTGGCTACACCAGATATTTCCCCAAGTCCATCAGCTGCTGCAGGTCCAGGGCCACTAACTTTAGGTGTTTCTGATGATATAAGTCATCAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACAGTTGCTTCTGTAATGATGCTGGTGGTCTTGATTGTTCTGATTCGAAGAAAAAACAGAGAGCTGAAGGATTCAGAAAAAACAGATGTCAACTCTTCAAAATCCTTCCCCTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCTATGTTTAAAAAATTCAGCTATAAAGAGATCAAGAAGGCAACAGAGAGTTTTAGTACAACAATTGGACAAGGAGGATATGGAACCGTTTATAAAGCTCAATTCAGTGATGGCTTAGTTGTAGCTGTGAAGAGGATGAACAAAGTATCCGAGCAGGGGGAGGATGAATTTGGCAGAGAAATAGAGCTGCTTTCGAGATTACATCACCGACATCTTGTTGCTTTAAGAGGCTTTTCTGTTGAAAAGCATGAACGGTTTCTCGTGTATGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTGAGTTGGCAGACGAGAATCCAAATTGCCATCGACGTCGCTAATGCTCTGGAGTACCTTCACTATTATTGTGACCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATCTTACTGGATGAGAACTTTGTTGCTAAGGTTGCGGATTTTGGCCTTGCGCATGCTTCAAAGGGGGGTTCTGTTTTCTTTGAACCCGTAAATACCGATATCCGTGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACACAAGAGCTTACCAAGAAAAGTGATATCTACAGCTACGGCGTGCTACTTCTGGAAATAGTAACTGGGAGACGTGCAATACAAGATGGGAAGAATTTAGTTGAATGGTCTCAGGTGTACATGGTTTCGGATTCTAGGATATCTGAACTAGTAGATCCAAGCATCAAGTGTTCTGTTAACTTGGACCAACTTCACACAGTCGTGTCGATTGTGAGATGGTGCACCGAGGGAGAAGGCAGAGCGAGGCCCTCGATTAAACAGGTGCTTCGGCTATTGTATGAGAGTTCGGACCCTATGCATCAAGGGCTGGTAGAAGCTGTTGATGATGAAGAATATGGAGGCACTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTTCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGATCAATTGTTTTAG 2043 43.81 MAATAVSRALFLLGFLLFLQMQLPETMADCPLDLSGSNFTLAASICSDPNERGKCCRYINAFVAVSVAQLANATGELGVSSNLSNICLQSIFQTMGLYGVPRNATAFCGVGTKIPVNYACRGRETVTQMLESPKFPNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPPSVIDLATCFFGVQGLNRPPAPSPSLATPDISPSPSAAAGPGPLTLGVSDDISHQHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKNRELKDSEKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATESFSTTIGQGGYGTVYKAQFSDGLVVAVKRMNKVSEQGEDEFGREIELLSRLHHRHLVALRGFSVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTKKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSQVYMVSDSRISELVDPSIKCSVNLDQLHTVVSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGTEGRQSMSKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4848472 4853663 + Maker00002962 Lcy6g0518 634962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0518 680 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0518 680 MobiDBLite consensus disorder prediction 213 236 - -
Lcy6g0518 680 Pfam SPARK 28 168 IPR043891 -
Lcy6g0518 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Lcy6g0518 680 FunFam Putative receptor-like protein kinase 403 603 - -
Lcy6g0518 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Lcy6g0518 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Lcy6g0518 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0518 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0518 680 CDD STKc_IRAK 333 595 - -
Lcy6g0518 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Lcy6g0518 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0518 680 FunFam Putative receptor-like protein kinase 296 402 - -
Lcy6g0518 680 PANTHER OS01G0750732 PROTEIN 196 634 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0518 Lcy-Chr6:4848472 Lcy7g0086 Lcy-Chr7:813779 5.22E-66 dispersed
Lcy8g2025 Lcy-Chr8:46488110 Lcy6g0518 Lcy-Chr6:4848472 9.72E-58 dispersed
Lcy6g0518 Lcy-Chr6:4848472 Lcy9g1233 Lcy-Chr9:36786187 1.91E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66013 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0518 - - - 0.0