Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0519 ATGACAAAGGTGGGCGAGGCCCCTTTTGGGAGAGAGGCAACTTGCCGTGGCAGGTTTTTTTTCCTTCTTCTTGCTGTGTCGTGGGCCGTTTGGCTTGAGAGAAATAATAGGATGTTTAGAGAGGAAAGATTGATGGAGGAAGTTTGGGAGGTTGTTAGGTTTTATTCCTCCTTATGGGTGTCGGTTACTAGACCGTTTTGTAATTATGATCTTGATCTTGGTCTTACATTGCAAATCTCCCTATTCAACTTCTTGAATGCTCTCGCTTCTCAAGGAAGACTGGGTAGGAAATCTTGTGCTGTGGGATGTGAATTTTCGACCAATCCAAGTAGAGATCCTGATGCTGCTTTTGGTTTAAATCACCAGGGTGGAATACCTTCAATTATTCGATCCATGGAATCATCTCTATATTATGGAGAGAACAATATTGCCCAGGCACGACGGTGGGTAAGCACAATCTCTTATCTTACCATTATGCTTTTTGGAGTACAAAATTTCCCCTTTCTTAGCCAAGAATATCACAATGCCTCATGGGAATCTTTTGACGACATAGCTACCCAAAATTTCACTTTGTCAAGATTGGGTGGGGGAAAATTGATATGGCTAAACTGCAAGAATGGTTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGAAAAGAGTGAGAATGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTTCGCATGGAAGCTCTTGAGGCTCTTGAAAAGCTGAATGTCACAATAGATTCATATGGTGCTTGCCACAGAAATCGTGATGGAAATGCAGTGGACAAAGTGGAGACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCTAACGAGGAAGATTATGTGACAGAAAAATATTTCCAATCTCTAGTTGCTGGAGCCGTTCCAGTGGTTATTGGAGCTCCAAATATTCAAGAGTTTGCTCCTTCACCTGCTTCATTTTTGCATATCAAGGAGCTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGATGCTTTCAACAACTCTTTGAGGTGGAAATATGAGGGTCCGTCTGATTCTTTCAAGGCACTATTGGATATGGCAGCTGTTCATTCGTCATGCCGCCTTTGTATTCATGTAGCAACTAGTATTCATGAGACAGAAGAAAAGGGTCTAGCGTTCAAAAAGCGACCTTGTAAATGCACCAGAGGTTCAGAGACTGTTTATCACTTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTAA 1353 42.05 MTKVGEAPFGREATCRGRFFFLLLAVSWAVWLERNNRMFREERLMEEVWEVVRFYSSLWVSVTRPFCNYDLDLGLTLQISLFNFLNALASQGRLGRKSCAVGCEFSTNPSRDPDAAFGLNHQGGIPSIIRSMESSLYYGENNIAQARRWVSTISYLTIMLFGVQNFPFLSQEYHNASWESFDDIATQNFTLSRLGGGKLIWLNCKNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQEKSENALAAAFISNCGARNFRMEALEALEKLNVTIDSYGACHRNRDGNAVDKVETLKRYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIQEFAPSPASFLHIKELSDVESVANSMKYLAANPDAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHVATSIHETEEKGLAFKKRPCKCTRGSETVYHLYVRERGRFNSESIFLR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4853929 4861217 - Maker00002454 Lcy6g0519 634963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0519 450 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 120 408 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Lcy6g0519 450 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 199 383 - -
Lcy6g0519 450 Gene3D - 202 383 IPR038577 -
Lcy6g0519 450 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 241 408 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Lcy6g0519 450 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0519 K00753 - - csv:101202837 455.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0519 Lcy-Chr6:4853929 Lcy3g0673 Lcy-Chr3:24561187 4.92E-13 dispersed
Lcy3g1121 Lcy-Chr3:36213581 Lcy6g0519 Lcy-Chr6:4853929 9.17E-156 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1284 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.4 2.0e-155 546.6
Lcy5g2530 . 116 586 Xyloglucan Fucosyltransferase1 AT1G14080 55.0 8.1e-152 534.6
Lcy5g1284 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.3e-164 576.2
Lcy5g2530 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 4.1e-161 565.5
Lcy6g0711 . 97 598 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 1.3e-143 507.3
Lcy6g0712 . 61 539 Xyloglucan Fucosyltransferase1 AT1G14100 51.2 2.3e-140 496.5
Lcy5g1284 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 5.5e-136 481.9
Lcy5g2530 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 2.2e-132 469.9
Lcy3g1121 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 65.2 5.1e-196 681.4
Lcy6g0519 . 99 450 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 8.6e-119 424.9
Lcy10g1628 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 8.7e-167 583.9
Lcy5g1284 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-129 459.9
Lcy5g1284 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 1.1e-183 640.6
Lcy5g2530 . 118 586 Xyloglucan Fucosyltransferase1 AT2G03210 59.6 2.9e-168 589.3
Lcy5g1284 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.2 1.3e-197 686.8
Lcy5g2530 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 2.1e-187 652.9
Lcy6g0711 . 107 594 Xyloglucan Fucosyltransferase1 AT2G03220 53.1 2.1e-150 530.0
Lcy6g0712 . 59 538 Xyloglucan Fucosyltransferase1 AT2G03220 51.9 2.2e-144 510.0
Lcy5g1284 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.5 3.5e-152 535.8
Lcy5g2530 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 8.3e-146 514.6
Lcy5g1284 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.1 2.5e-145 513.1
Lcy5g2530 . 107 586 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 4.1e-140 495.7
Lcy5g1284 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.6 3.4e-150 529.3
Lcy5g2530 . 112 586 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 5.2e-143 505.4
Lcy3g1121 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 1.1e-190 663.7
Lcy6g0519 . 97 450 Xyloglucan Fucosyltransferase1 AT3G19280 65.3 1.7e-124 443.7
Lcy5g1284 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-129 459.9
Lcy5g1284 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 1.1e-183 640.6
Lcy5g2530 . 118 586 Xyloglucan Fucosyltransferase1 AT2G03210 59.6 2.9e-168 589.3
Lcy5g1284 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.2 1.3e-197 686.8
Lcy5g2530 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 2.1e-187 652.9
Lcy6g0711 . 107 594 Xyloglucan Fucosyltransferase1 AT2G03220 53.1 2.1e-150 530.0
Lcy6g0712 . 59 538 Xyloglucan Fucosyltransferase1 AT2G03220 51.9 2.2e-144 510.0
Lcy5g1284 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 1.1e-183 640.6
Lcy5g2530 . 118 586 Xyloglucan Fucosyltransferase1 AT2G03210 59.6 2.9e-168 589.3
Lcy5g1284 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-129 459.9
Lcy5g1284 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.6 3.4e-150 529.3
Lcy5g2530 . 112 586 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 5.2e-143 505.4
Lcy5g1284 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.1 2.5e-145 513.1
Lcy5g2530 . 107 586 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 4.1e-140 495.7
Lcy5g1284 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.4 2.0e-155 546.6
Lcy5g2530 . 116 586 Xyloglucan Fucosyltransferase1 AT1G14080 55.0 8.1e-152 534.6
Lcy5g1284 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.3e-164 576.2
Lcy5g2530 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 4.1e-161 565.5
Lcy6g0711 . 97 598 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 1.3e-143 507.3
Lcy6g0712 . 61 539 Xyloglucan Fucosyltransferase1 AT1G14100 51.2 2.3e-140 496.5
Lcy5g1284 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 5.5e-136 481.9
Lcy5g2530 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.9 2.2e-132 469.9
Lcy5g1284 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.5 3.5e-152 535.8
Lcy5g2530 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 8.3e-146 514.6
Lcy3g1121 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 1.1e-190 663.7
Lcy6g0519 . 97 450 Xyloglucan Fucosyltransferase1 AT3G19280 65.3 1.7e-124 443.7
Lcy3g1121 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 65.2 5.1e-196 681.4
Lcy6g0519 . 99 450 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 8.6e-119 424.9
Lcy10g1628 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 8.7e-167 583.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70