Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0519 ATGACAAAGGTGGGCGAGGCCCCTTTTGGGAGAGAGGCAACTTGCCGTGGCAGGTTTTTTTTCCTTCTTCTTGCTGTGTCGTGGGCCGTTTGGCTTGAGAGAAATAATAGGATGTTTAGAGAGGAAAGATTGATGGAGGAAGTTTGGGAGGTTGTTAGGTTTTATTCCTCCTTATGGGTGTCGGTTACTAGACCGTTTTGTAATTATGATCTTGATCTTGGTCTTACATTGCAAATCTCCCTATTCAACTTCTTGAATGCTCTCGCTTCTCAAGGAAGACTGGGTAGGAAATCTTGTGCTGTGGGATGTGAATTTTCGACCAATCCAAGTAGAGATCCTGATGCTGCTTTTGGTTTAAATCACCAGGGTGGAATACCTTCAATTATTCGATCCATGGAATCATCTCTATATTATGGAGAGAACAATATTGCCCAGGCACGACGGTGGGTAAGCACAATCTCTTATCTTACCATTATGCTTTTTGGAGTACAAAATTTCCCCTTTCTTAGCCAAGAATATCACAATGCCTCATGGGAATCTTTTGACGACATAGCTACCCAAAATTTCACTTTGTCAAGATTGGGTGGGGGAAAATTGATATGGCTAAACTGCAAGAATGGTTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGAAAAGAGTGAGAATGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTTCGCATGGAAGCTCTTGAGGCTCTTGAAAAGCTGAATGTCACAATAGATTCATATGGTGCTTGCCACAGAAATCGTGATGGAAATGCAGTGGACAAAGTGGAGACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCTAACGAGGAAGATTATGTGACAGAAAAATATTTCCAATCTCTAGTTGCTGGAGCCGTTCCAGTGGTTATTGGAGCTCCAAATATTCAAGAGTTTGCTCCTTCACCTGCTTCATTTTTGCATATCAAGGAGCTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGATGCTTTCAACAACTCTTTGAGGTGGAAATATGAGGGTCCGTCTGATTCTTTCAAGGCACTATTGGATATGGCAGCTGTTCATTCGTCATGCCGCCTTTGTATTCATGTAGCAACTAGTATTCATGAGACAGAAGAAAAGGGTCTAGCGTTCAAAAAGCGACCTTGTAAATGCACCAGAGGTTCAGAGACTGTTTATCACTTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTAA 1353 42.05 MTKVGEAPFGREATCRGRFFFLLLAVSWAVWLERNNRMFREERLMEEVWEVVRFYSSLWVSVTRPFCNYDLDLGLTLQISLFNFLNALASQGRLGRKSCAVGCEFSTNPSRDPDAAFGLNHQGGIPSIIRSMESSLYYGENNIAQARRWVSTISYLTIMLFGVQNFPFLSQEYHNASWESFDDIATQNFTLSRLGGGKLIWLNCKNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQEKSENALAAAFISNCGARNFRMEALEALEKLNVTIDSYGACHRNRDGNAVDKVETLKRYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIQEFAPSPASFLHIKELSDVESVANSMKYLAANPDAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHVATSIHETEEKGLAFKKRPCKCTRGSETVYHLYVRERGRFNSESIFLR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4853929 4861217 - Maker00002454 Lcy6g0519 634963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0519 450 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 120 408 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Lcy6g0519 450 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 199 383 - -
Lcy6g0519 450 Gene3D - 202 383 IPR038577 -
Lcy6g0519 450 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 241 408 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Lcy6g0519 450 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0519 Lcy-Chr6:4853929 Lcy3g0673 Lcy-Chr3:24561187 4.92E-13 dispersed
Lcy3g1121 Lcy-Chr3:36213581 Lcy6g0519 Lcy-Chr6:4853929 9.17E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0519 K00753 - csv:101202837 455.292