Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0535 ATGTCATTCCGAAGCATAGTTCGCGATGTGAGGGATAGCATTGGGAGTTTATCTAGACGGGGTTTCGATGTCAAGCTGGGTGGTCATCATAGAGGAAAGTCCAATGCATCATCGTTAAATGATCTACATGATCAGCCTTCAGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGAAGGAATGTCGTTGCCTGTGCTGCAGTTTGCCGTTCTTGGAGAATTATGTGCATGGAGATCGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGCATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAGCGTACGCGAAGAACTACCAGCACAGAGTACATTATCTCGATGGATGCAGATAATATTTCGAGATCAAGTAGCACTTACATCGGAAAGTTGAGGTCGAACTTTCTTGGAACAAAGTTCATTGTATATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCGAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGAAGAATGCATTGTATAATGCATTCAATACCAGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAGGCCAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCATTCTCCAAAAGAATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATAGGGAGGGCAGCATTGGATGGTGATGAGGAAGGAAAGATGAGACCTTTGGTTCTAAAAAACAAACCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTCCAGTTGATCGCCGCAACACAGCCAGCAGCCGGTGCTCCAACGCCGTCTCAACCAGGCCCTCCCGAGCACGACAAGATCATACTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTTTCGGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.71 MSFRSIVRDVRDSIGSLSRRGFDVKLGGHHRGKSNASSLNDLHDQPSVVQNGCWASLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDASVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKRIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5008947 5012965 - Maker00002491 Lcy6g0535 634979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0535 428 PANTHER TUBBY-RELATED 45 427 - -
Lcy6g0535 428 Pfam Tub family 115 423 IPR000007 -
Lcy6g0535 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lcy6g0535 428 Gene3D - 49 101 - -
Lcy6g0535 428 FunFam Tubby-like F-box protein 111 428 - -
Lcy6g0535 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lcy6g0535 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Lcy6g0535 428 CDD F-box_AtTLP-like 54 98 - -
Lcy6g0535 428 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515(InterPro)
Lcy6g0535 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Lcy6g0535 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0535 K19600 - - csv:101216314 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0706 Lcy-Chr1:6046801 Lcy6g0535 Lcy-Chr6:5008947 2.66E-141 dispersed
Lcy3g1980 Lcy-Chr3:46927921 Lcy6g0535 Lcy-Chr6:5008947 9.37E-11 dispersed
Lcy6g0535 Lcy-Chr6:5008947 Lcy9g0979 Lcy-Chr9:32733901 1.11E-230 dispersed
Lcy6g0535 Lcy-Chr6:5008947 Lcy10g1353 Lcy-Chr10:36683909 1.29E-240 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0535 . 1 429 TUB Transcription Factor Family AT1G76900 71.0 2.3e-171 599.4
Lcy10g1353 . 1 433 TUB Transcription Factor Family AT1G76900 69.8 6.6e-171 597.8
Lcy9g0979 . 73 513 TUB Transcription Factor Family AT1G76900 69.8 2.8e-169 592.4
Lcy6g0905 . 1 414 TUB Transcription Factor Family AT1G76900 51.0 6.0e-116 415.2
Lcy6g0535 . 174 429 TUB Transcription Factor Family AT1G25280 73.6 3.2e-101 365.5
Lcy10g1353 . 175 433 TUB Transcription Factor Family AT1G25280 71.3 2.2e-94 342.8
Lcy9g0979 . 255 513 TUB Transcription Factor Family AT1G25280 65.4 1.4e-88 323.6
Lcy6g0905 . 177 414 TUB Transcription Factor Family AT1G25280 56.0 1.7e-70 263.5
Lcy9g2212 . 268 496 TUB Transcription Factor Family AT1G25280 55.8 2.1e-68 256.5
Lcy11g1455 . 154 398 TUB Transcription Factor Family AT1G25280 50.4 1.8e-67 253.4
Lcy13g0203 . 161 408 TUB Transcription Factor Family AT1G25280 51.8 2.6e-66 249.6
Lcy1g0706 . 176 413 TUB Transcription Factor Family AT1G25280 50.4 8.6e-62 234.6
Lcy13g0203 . 104 408 TUB Transcription Factor Family AT5G18680 60.6 6.3e-98 354.8
Lcy11g1455 . 98 398 TUB Transcription Factor Family AT5G18680 60.0 5.5e-94 341.7
Lcy10g1353 . 112 433 TUB Transcription Factor Family AT5G18680 52.3 2.0e-83 306.6
Lcy6g0535 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 2.2e-82 303.1
Lcy9g0979 . 184 513 TUB Transcription Factor Family AT5G18680 51.4 6.4e-82 301.6
Lcy6g0905 . 115 414 TUB Transcription Factor Family AT5G18680 53.1 5.0e-79 292.0
Lcy9g2212 . 204 496 TUB Transcription Factor Family AT5G18680 52.2 4.7e-77 285.4
Lcy6g0905 . 1 413 TUB Transcription Factor Family AT2G18280 61.8 2.0e-144 509.6
Lcy1g0706 . 1 412 TUB Transcription Factor Family AT2G18280 60.7 2.0e-136 483.0
Lcy9g2212 . 89 495 TUB Transcription Factor Family AT2G18280 58.0 5.2e-124 441.8
Lcy6g0535 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 5.6e-118 421.8
Lcy9g0979 . 73 512 TUB Transcription Factor Family AT2G18280 50.8 6.4e-114 408.3
Lcy10g1353 . 1 432 TUB Transcription Factor Family AT2G18280 51.6 3.2e-113 406.0
Lcy11g1455 . 1 397 TUB Transcription Factor Family AT2G18280 51.8 4.1e-113 405.6
Lcy13g0203 . 1 407 TUB Transcription Factor Family AT2G18280 51.2 1.1e-110 397.5
Lcy6g0658 . 55 390 TUB Transcription Factor Family AT2G18280 50.7 7.3e-94 341.7
Lcy13g0203 . 1 408 TUB Transcription Factor Family AT2G47900 65.9 4.8e-157 551.6
Lcy11g1455 . 1 398 TUB Transcription Factor Family AT2G47900 66.7 8.2e-157 550.8
Lcy6g0535 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 7.0e-132 468.0
Lcy9g0979 . 73 513 TUB Transcription Factor Family AT2G47900 54.8 1.2e-131 467.2
Lcy10g1353 . 1 433 TUB Transcription Factor Family AT2G47900 56.7 5.9e-131 464.9
Lcy6g0905 . 1 414 TUB Transcription Factor Family AT2G47900 56.0 2.7e-123 439.5
Lcy9g2212 . 134 496 TUB Transcription Factor Family AT2G47900 59.3 1.4e-116 417.2
Lcy1g0706 . 1 413 TUB Transcription Factor Family AT2G47900 52.8 3.9e-114 409.1
Lcy6g0658 . 55 391 TUB Transcription Factor Family AT2G47900 52.3 2.2e-101 366.7
Lcy3g1980 . 82 307 TUB Transcription Factor Family AT1G16070 60.9 1.3e-74 277.3
Lcy6g0535 . 66 429 TUB Transcription Factor Family AT1G43640 68.6 5.3e-147 518.1
Lcy9g0979 . 139 513 TUB Transcription Factor Family AT1G43640 68.8 1.2e-143 506.9
Lcy10g1353 . 65 433 TUB Transcription Factor Family AT1G43640 66.1 8.7e-142 500.7
Lcy13g0203 . 47 408 TUB Transcription Factor Family AT1G43640 50.1 2.5e-104 376.3
Lcy11g1455 . 49 398 TUB Transcription Factor Family AT1G43640 51.7 3.6e-103 372.5
Lcy9g2212 . 157 496 TUB Transcription Factor Family AT1G43640 50.8 5.7e-101 365.2
Lcy6g0905 . 68 414 TUB Transcription Factor Family AT1G43640 50.1 2.0e-98 356.7
Lcy9g2212 . 122 496 TUB Transcription Factor Family AT1G47270 65.0 2.2e-135 479.6
Lcy6g0905 . 34 414 TUB Transcription Factor Family AT1G47270 57.9 1.7e-122 436.8
Lcy1g0706 . 19 413 TUB Transcription Factor Family AT1G47270 56.3 5.3e-121 431.8
Lcy6g0535 . 1 429 TUB Transcription Factor Family AT1G47270 52.7 5.2e-116 415.2
Lcy10g1353 . 48 433 TUB Transcription Factor Family AT1G47270 53.7 1.7e-111 400.2
Lcy6g0658 . 1 391 TUB Transcription Factor Family AT1G53320 70.3 9.4e-155 543.9
Lcy6g0905 . 20 414 TUB Transcription Factor Family AT1G53320 51.1 1.7e-103 373.6
Lcy11g1455 . 98 398 TUB Transcription Factor Family AT3G06380 61.5 6.4e-95 344.7
Lcy13g0203 . 107 408 TUB Transcription Factor Family AT3G06380 60.8 2.7e-93 339.3
Lcy6g0535 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 2.1e-82 303.1
Lcy10g1353 . 116 433 TUB Transcription Factor Family AT3G06380 52.5 5.2e-81 298.5
Lcy6g0905 . 119 414 TUB Transcription Factor Family AT3G06380 53.7 7.5e-80 294.7
Lcy9g2212 . 208 496 TUB Transcription Factor Family AT3G06380 51.2 1.4e-78 290.4
Lcy1g0706 . 118 413 TUB Transcription Factor Family AT3G06380 50.8 6.8e-73 271.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20250 None None None None Lcy TF