Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0535 ATGTCATTCCGAAGCATAGTTCGCGATGTGAGGGATAGCATTGGGAGTTTATCTAGACGGGGTTTCGATGTCAAGCTGGGTGGTCATCATAGAGGAAAGTCCAATGCATCATCGTTAAATGATCTACATGATCAGCCTTCAGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGAAGGAATGTCGTTGCCTGTGCTGCAGTTTGCCGTTCTTGGAGAATTATGTGCATGGAGATCGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGCATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAGCGTACGCGAAGAACTACCAGCACAGAGTACATTATCTCGATGGATGCAGATAATATTTCGAGATCAAGTAGCACTTACATCGGAAAGTTGAGGTCGAACTTTCTTGGAACAAAGTTCATTGTATATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCGAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGAAGAATGCATTGTATAATGCATTCAATACCAGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAGGCCAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCATTCTCCAAAAGAATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATAGGGAGGGCAGCATTGGATGGTGATGAGGAAGGAAAGATGAGACCTTTGGTTCTAAAAAACAAACCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTCCAGTTGATCGCCGCAACACAGCCAGCAGCCGGTGCTCCAACGCCGTCTCAACCAGGCCCTCCCGAGCACGACAAGATCATACTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTTTCGGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.71 MSFRSIVRDVRDSIGSLSRRGFDVKLGGHHRGKSNASSLNDLHDQPSVVQNGCWASLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDASVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKRIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5008947 5012965 - Maker00002491 Lcy6g0535 634979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0535 428 PANTHER TUBBY-RELATED 45 427 - -
Lcy6g0535 428 Pfam Tub family 115 423 IPR000007 -
Lcy6g0535 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lcy6g0535 428 Gene3D - 49 101 - -
Lcy6g0535 428 FunFam Tubby-like F-box protein 111 428 - -
Lcy6g0535 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lcy6g0535 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lcy6g0535 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Lcy6g0535 428 CDD F-box_AtTLP-like 54 98 - -
Lcy6g0535 428 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515(InterPro)
Lcy6g0535 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Lcy6g0535 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0706 Lcy-Chr1:6046801 Lcy6g0535 Lcy-Chr6:5008947 2.66E-141 dispersed
Lcy3g1980 Lcy-Chr3:46927921 Lcy6g0535 Lcy-Chr6:5008947 9.37E-11 dispersed
Lcy6g0535 Lcy-Chr6:5008947 Lcy9g0979 Lcy-Chr9:32733901 1.11E-230 dispersed
Lcy6g0535 Lcy-Chr6:5008947 Lcy10g1353 Lcy-Chr10:36683909 1.29E-240 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20250 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0535 K19600 - csv:101216314 837.025