Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0540 ACTTTGTCTTCTTCAATTTGGACAGTGGAGAAAGAAAGAGAGAGAGAAACAAAAATGGAGATTGATCTTTCACTGAAAATTGATCATCACAGAGAAAAAAGTCAGCAAAAAGATGAAGAAAACCAAGAAGAAGAAGAAGAAAAAAACCATCAACTTCAAGAAAAAGAAGAAATGGGAGTTGAAGAAGAAGAAGCTGAAATTGATTTGGCTGCTGCCTCTGGTTTGAAAGTGTTTTTGCCACACAACATTAATGCAGGAGAGATTTCGGAGTTGCAGATGGAAATGGATCGGATGAAGGAAGAAAACAAGATGTTGAGAAAAGCAGTGGAACAAACAATGAAGGATTATTATGATCTTGAAATGAAAATTGCTATCATCCAACAAAACAATCTTCACAAAAAGGATTCTCACAACTTTCTATCATTCCATGGAAATGAGAACAAGAGGCAAGAAGAACCAAAACCAGATCACCTCGAGCTCGGAGAAACGGCAAAGAGAAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGAGAGAGGCAACTAGGGTTATCATTAGGGCTTCATACAGACAATGATTTGGAACAAGAAAACCATAAGGAAGAAGAAGAAACAAGAGAAAAGAACAAGGAATTAGATCCAACAACCAACTTCAATTCAATCCAAAACAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAAGGAAATCCATGTCCTCGAGCATACTATCGTTGCACAGTTGCACCGGGTTGCCCTGTTAGAAAGCAGGTCCAAAGATGCTTAGAAGACATGTCAATTCTCATAACAACGTACGAAGGAACACACAACCATCCACTCCCTGTGGGAGCCACAGCCATGGCTTCAACAGCTTCTGCAGCTGCTTCCTTCATGTTATTAGACTCTACAAATCTTTCTCTTCCAAACCCTCAAAACCCTAATATTCTAAACTCGTCTTCGTATTCTCCGACCTTCCTTGGATCGGCAAACCCTAATGAACCCTCGAAAGGGCTTGTCGTCGACCTCACAAGCAACAACTTCTATAGTCCGATGGCGAGCTCGTCGAGCTCGGCATTGGCTCAACCGTCCAATTGGATGAAAACAAACAGCCATTCGTATTACCAAAGGAACTTTCAAGCTAATCTTTTGAGTCCCTTTGATGGGCGGACTTGGAAACCGGCGGAGGATAATAAGCCACCATTGACGGCGGAGAGTGTGTCTGCCATTGCTTCTGACCCTAAGTTTCGAGTCGCGGTGGCAGCTGCCATTTCGTCGCTCATTAACAAGGAGAACAACCACCCGACTGCACATCCGGTCGAACATTCTTCTTTCGGTCCCAATAAGGATGGCGAAGGAGGTGGTGGCGGCGGCGATAATGGTGGCGGAAACAAGAAATGGGTTGTCGAATCGCTCTCGACGAATGGTAACTAA 1536 43.75 TLSSSIWTVEKERERETKMEIDLSLKIDHHREKSQQKDEENQEEEEEKNHQLQEKEEMGVEEEEAEIDLAAASGLKVFLPHNINAGEISELQMEMDRMKEENKMLRKAVEQTMKDYYDLEMKIAIIQQNNLHKKDSHNFLSFHGNENKRQEEPKPDHLELGETAKRRRVRSPSKEDEMRERQLGLSLGLHTDNDLEQENHKEEEETREKNKELDPTTNFNSIQNKPQRPELQGMAPPQNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNLSLPNPQNPNILNSSSYSPTFLGSANPNEPSKGLVVDLTSNNFYSPMASSSSSALAQPSNWMKTNSHSYYQRNFQANLLSPFDGRTWKPAEDNKPPLTAESVSAIASDPKFRVAVAAAISSLINKENNHPTAHPVEHSSFGPNKDGEGGGGGGDNGGGNKKWVVESLSTNGN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5106307 5111235 - Maker00002949 Lcy6g0540 634984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0540 511 MobiDBLite consensus disorder prediction 8 57 - -
Lcy6g0540 511 MobiDBLite consensus disorder prediction 1 63 - -
Lcy6g0540 511 Pfam WRKY DNA -binding domain 256 314 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0540 511 MobiDBLite consensus disorder prediction 193 214 - -
Lcy6g0540 511 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0540 511 MobiDBLite consensus disorder prediction 136 183 - -
Lcy6g0540 511 FunFam probable WRKY transcription factor 31 240 317 - -
Lcy6g0540 511 SMART WRKY_cls 255 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0540 511 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 468 IPR044810 GO:0003700(InterPro)
Lcy6g0540 511 MobiDBLite consensus disorder prediction 464 511 - -
Lcy6g0540 511 Coils Coil 27 61 - -
Lcy6g0540 511 Coils Coil 192 212 - -
Lcy6g0540 511 Coils Coil 88 115 - -
Lcy6g0540 511 MobiDBLite consensus disorder prediction 136 239 - -
Lcy6g0540 511 Gene3D WRKY domain 240 317 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g0540 511 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0547 Lcy-Chr4:6562441 Lcy6g0540 Lcy-Chr6:5106307 5.28E-46 dispersed
Lcy5g2291 Lcy-Chr5:45887555 Lcy6g0540 Lcy-Chr6:5106307 2.63E-45 dispersed
Lcy6g0540 Lcy-Chr6:5106307 Lcy7g0314 Lcy-Chr7:2684309 2.13E-21 dispersed
Lcy6g0540 Lcy-Chr6:5106307 Lcy2g0589 Lcy-Chr2:5035337 9.02E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20251 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0540 - - - 0.0