Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0566 ATGATGAAGATTTTCATCAGCTTTCTTCTCTGTTTACTCTCTGTAACTTCAGCAGCCACTCCAATCACCAACCCCACCTGCCCAATGGACCTCAATTATGTCCTCAGAATCCCTTGGAATGCGACTGATTGCCGAAACCCCTTCTTCCAAACCACTGCCAAAGCCGCCATGAACGATACCTCCAAAATCCCTTGTTGTCAAACCCTCTTGTCATTGTATGGAATTGCTCTGGCCCAACACCTCAAAGAAACCTCTCTTTTCAACCTCCCTGACCTTGCGACCTCCAATTCTTGCCTTCGTGATTACCAATCGAAGCTCTCGTCGCTCTCCCTTCCCGGCGAACTTGTTTCGCATTGCTTTGATCCTTTGCAATTCGTGATCTCTGATAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCAGAACTCGCCGCTTGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTAGTTGTGATGCTTGTCTCGCCGCTGGTTTCAAAGTTCAATCGATTTTGACTGGAATTGATGGTAATAAATCTCATTCTATGGATTGCTTTTACTTTGCTGTTCTTTATGCTGCCGGCATCGTGAATGAGTTTGGCCCTGAGGGCGACAGTGCGTTAGGTTGCATTTTTAATCTGCAATTGAGTACTGACAAGGATTCGAAAAGTAAGCATGCTGCTCTAGTTTATGGTCTTACTGCTGCTGCTGTTGGAGTTTTGATCGTTTTTGTTCTGTTGGGGATTGGCTTTTGGTATTACAAATGGAAAAAAATGGTTAAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCCAGGCCAAATACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTGATAGCTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAGGGCAATGCAGAGTTTTGCAATGAAGTTGAAATTATCAGTAATTTGAAGCACAGGAATCTTGTTCCCCTTAGAGGTTGTTGTGTGATTGATGGGGATGATGGTTATTATGAGAGAGAAAGTGAGAGATATCTTGTTTATGATTACATGCCGAATGGAAATCTTGATGATCATTTGTTTCTTACACCATTTGATCAAGTTGGAACTGTAAAGAAATCATTAACATGGCCTCAAAGGAAGAATATTATCTTGGATGTGGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAACCTGCCATATATCACAGAGATATCAAGGCGACGAACATATTGCTAGATGCAGATATGAGAGCAAGAGTGGCAGATTTTGGGCTCGCTAAACAGAGCAGGGAAGGACAGTCTCATCTAACAACTCGAGTTGCAGGAACTCATGGGTATCTAGCCCCTGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTCGGAGTAGTTGTTTTAGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCTTCACCGCGTGCGTTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGGAAAATAGGGGAGACTCTAGACCCTTCTCTGCTGAAAGATGGAGATTCATCTAATTCAAATCCAAAAGCCATAATGGAGAGGTTCGTTGCGGTTGGAATTTTATGTTCTCATGTGATGGTGGCTTTAAGGCCTACCATTATGGACGCTCTGAAAATGTTGGAAGGTGATATTGAAGTCCCCCAGATTTCTGATCGGCCAGTGCCTTATGGGCATCCTTCATTTGTTGGCGATGGCAGCAACTTCAGTATATCACCGAGATTGAGCGGGCCTCAATTGCATAGCGGCGACATGCTCAGATGA 1941 43.59 MMKIFISFLLCLLSVTSAATPITNPTCPMDLNYVLRIPWNATDCRNPFFQTTAKAAMNDTSKIPCCQTLLSLYGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGELVSHCFDPLQFVISDNVCAGIQTTRDWVSKLGQNSPLDSGCRSELVGPSCDACLAAGFKVQSILTGIDGNKSHSMDCFYFAVLYAAGIVNEFGPEGDSALGCIFNLQLSTDKDSKSKHAALVYGLTAAAVGVLIVFVLLGIGFWYYKWKKMVKKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATDSFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGYYERESERYLVYDYMPNGNLDDHLFLTPFDQVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFVAVGILCSHVMVALRPTIMDALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPRLSGPQLHSGDMLR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5368472 5370412 + Maker00002877 Lcy6g0566 635010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0566 646 FunFam probable receptor-like protein kinase At1g11050 267 391 - -
Lcy6g0566 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0566 646 PANTHER OS01G0750732 PROTEIN 43 609 IPR050885 -
Lcy6g0566 646 SUPERFAMILY Protein kinase-like (PK-like) 285 601 IPR011009 -
Lcy6g0566 646 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 392 608 - -
Lcy6g0566 646 Pfam Protein kinase domain 309 523 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0566 646 Gene3D Phosphorylase Kinase; domain 1 273 391 - -
Lcy6g0566 646 ProSitePatterns Protein kinases ATP-binding region signature. 313 336 IPR017441 GO:0005524(InterPro)
Lcy6g0566 646 ProSiteProfiles Protein kinase domain profile. 307 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0566 646 SMART serkin_6 307 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0566 646 MobiDBLite consensus disorder prediction 627 646 - -
Lcy6g0566 646 Pfam SPARK 24 192 IPR043891 -
Lcy6g0566 646 Gene3D Transferase(Phosphotransferase) domain 1 392 610 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0566 Lcy-Chr6:5368472 Lcy9g1547 Lcy-Chr9:40584577 1.46E-208 dispersed
Lcy6g0566 Lcy-Chr6:5368472 Lcy3g1650 Lcy-Chr3:43729443 1.10E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66014 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0566 - - - 0.0