Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0568 | ATGGAGATGGATTCCGCCCACCGTCCCGAGACGCCCGAGAAAGATGGCAGTGAGAAGAAGAAGGAGGAGAAGCACGGGAGCGGAGAGGAGGACGACGACGATAGCGACATGCCGTCGACGTTGAGCCTTAGAGAGCTCTCAAAGGTTATACTTCCTCCTTTGGGAGTTTCTTCAAGCTGGTCTGATGGCAGTAAAGTGAAGGGCAATAGATGGATCATCTCTCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGCGTGGGTTTATCCATTGGAAGTGGCGTTTGTGGACGCAATTCCCAAGCGGCAATTATTAATTGCAGACACTGTCGTCGATTTCTTCTTCGCCATTGACATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATGTGGCATCAACAATCCCATTTGAGACACTGGCCTACCTGTTCACAGGCAAATATGATGATAGTCTTACTTATGTCCTCCTGGGATTGCTTAGATTTTGGCGACTGCGACGCATCAAGCAATTTTTCACTAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTTCTATCTGTTACTTTGTTTTATGTCCATTGTGCGGGATGCCTCTACTACTTGTTGGCTGACCGATATCCACATGAAGGACAGACCTGGATCGGATCCGCGATTCCAAATTTTAAAGAGATCAGCCTTGGAGTGAGATATATTTCAGCTTTGTATTGGTCTGTCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCATAGAGATGATCTTCATCATTTTCTACATGCTCTTCAATCTCGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTTGTTGAAGGAACTCGTCGCACGATGGAATTTAGAAACAGCATCGAAATGGCATCGAATTTTGTTAACCGGAACCGCCTGCCTTCAAGGTTGAAGGAGCATATATTGGCATATATGTGTTTGAGATTCAAGGCCGAGAGCCTAAACCAACAACATCTGATTGAACAGCTTCCAAAGTCGATTTGCAAAAACATCTGTCAGCAATTGTTTTTGCCAACCGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGTGCTGTTGGTTGCAAAGATGAAAGCCGAGTACATTCCTCCTAAGGAGGACGTGATAATACACAACGAAAGCCCCGATGAAGTTTATATCATTGTGTCCGGGGAGATCGAAATTATTGACTGTGAGAGGGAGGTGGAGCGGATTGTTGGGACGTTACATTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACCTACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTAAAAACAAGCGTACTACAAGAAGCCATGCATATCAGGCAAGAAGATAGTATGGCCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGGTGCCGGTGTTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAATTAGATTTTGCTAGAGTTAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGATTGCCACATTCAATGGAGGAGCTCAAAAAAGTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCACAGTTGCAGATGATAAATCTCTGTAA | 1917 | 43.87 | MEMDSAHRPETPEKDGSEKKKEEKHGSGEEDDDDSDMPSTLSLRELSKVILPPLGVSSSWSDGSKVKGNRWIISPMSSRYRWWQSFMVVLVAYSAWVYPLEVAFVDAIPKRQLLIADTVVDFFFAIDIFFTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDVASTIPFETLAYLFTGKYDDSLTYVLLGLLRFWRLRRIKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPHEGQTWIGSAIPNFKEISLGVRYISALYWSVTTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKNICQQLFLPTVEKVYLFKGVSKETLVLLVAKMKAEYIPPKEDVIIHNESPDEVYIIVSGEIEIIDCEREVERIVGTLHCGSMFGEVGALCCKNQNFTYRTKTLSQLLRLKTSVLQEAMHIRQEDSMAIVKNFLQERELSHKITIEGSPEKEVPVLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKVAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFTVADDKSL | 638 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5404840 | 5412399 | + | Maker00002522 | Lcy6g0568 | 635012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0568 | 638 | SUPERFAMILY | Voltage-gated potassium channels | 75 | 323 | - | - | |
| Lcy6g0568 | 638 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Lcy6g0568 | 638 | FunFam | Potassium channel KAT2 | 388 | 523 | - | - | |
| Lcy6g0568 | 638 | SMART | cnmp_10 | 400 | 517 | IPR000595 | - | |
| Lcy6g0568 | 638 | Pfam | Cyclic nucleotide-binding domain | 424 | 502 | IPR000595 | - | |
| Lcy6g0568 | 638 | PRINTS | EAG/ELK/ERG potassium channel family signature | 314 | 323 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy6g0568 | 638 | PRINTS | EAG/ELK/ERG potassium channel family signature | 117 | 127 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy6g0568 | 638 | PRINTS | EAG/ELK/ERG potassium channel family signature | 270 | 287 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy6g0568 | 638 | PRINTS | EAG/ELK/ERG potassium channel family signature | 296 | 307 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy6g0568 | 638 | FunFam | Potassium channel KAT3 | 82 | 324 | - | - | |
| Lcy6g0568 | 638 | Gene3D | Jelly Rolls | 367 | 535 | IPR014710 | - | |
| Lcy6g0568 | 638 | CDD | CAP_ED | 400 | 513 | IPR000595 | - | |
| Lcy6g0568 | 638 | Pfam | KHA, dimerisation domain of potassium ion channel | 559 | 630 | IPR021789 | - | |
| Lcy6g0568 | 638 | Pfam | Ion transport protein | 80 | 329 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy6g0568 | 638 | SUPERFAMILY | cAMP-binding domain-like | 327 | 517 | IPR018490 | - | |
| Lcy6g0568 | 638 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 400 | 519 | IPR000595 | - | |
| Lcy6g0568 | 638 | PANTHER | POTASSIUM CHANNEL AKT1 | 28 | 529 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lcy6g0568 | 638 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Lcy6g0568 | 638 | Gene3D | - | 82 | 323 | - | - | |
| Lcy6g0568 | 638 | ProSiteProfiles | KHA domain profile. | 559 | 638 | IPR021789 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy6g0568 | Lcy-Chr6:5404840 | Lcy9g1802 | Lcy-Chr9:43159089 | 1.23E-146 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g0568 | K21867 | - | csv:101205212 | 1098.57 |