Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0578 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGGAGTGGTAGTGATTCTGAAGCGGAGGAGAGTGACTATGATGAAGAGATTGACGACCTACCGACTGATCCTAGCTCCCAACCGAATAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGACGATTCTGATAAAGATAAACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCCTGCAGGAGAGTTTTGATAAGATAAATAAACAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCAACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTGAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTAAAAAAGAACAATAAGCAATATGAAGAGTTAATTACCAAGTGTAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGATGAAGAGTTGGAGTCGGAGGAGGAGGATGATGACGATTCTGAGATTGAGGAGGATCCTTCTAAAATCATGTCAGGATCAGAAGATGAGGATGAGGAAGAAGCCCAAGAGGATGGGCCTGGGCCCGGTGGTAACTGGGTGATACAGCTGAGCAAAAGAGATAAGCTCATGGATAAGCAATTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTTAACAAGAAATTTAAGGAGGTTGTGGCTGCCCGGGGTAGGAAGGGAACCGGAAGATTTGAGCAGGTTGAGCAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGACACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCATAATATGCTTTCTATAATTGACATTCTTGTGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAGAGCCAGAAGCCAGCTGATTATAAGGGCACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATCGACACTGAGTTTTTTAAGAGTCTGCAGTGTATTGATCCACATACGCGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGAGATTACAAAGCAGCTTCGAAAGTCGCCTTAAGACGTGTTGAACTGATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAACTGTCAGAAGATGGAGATAGTGGAGATGCAAATGAAGAGGCTAAAGTTGTAGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACACCGGAGCTCGTTCCTCGCAAACCCACCTTTCCAGAGAGTAGTAGAACTTTTATGGACATTCTGGTGACCCTCATATACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCAACATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTGCTAATGAGTCACTTGCAGGATAGTATTCAACACTTGGACATTTCGACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGCGGATTTCGGGTTGGCCTGATTAATGAAGGGCATGGCTGCCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGGAGGCAGATGCCATATCACATGCATATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTTCCCAACATGGCAGGCAATGTTCATGATGCAAAGCGCAAGGTTATTAGTAAGAACTTTAGAAGGTTACTTGAGGTGAGTGAGAGACAAACGTTCACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGAGATTTCCAGAAGGCGTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGTGATGGAGTGCTGGAAATGGTTAAAGGAAAGATTAAGGAGGAAGCTCTGAGGACTTACCTTCTCACATACTCTTCGTCTTATGATTCTCTGAGTTCAGAACAACTCACCCGAATGTTCGACCTCGCAGATGGTCAAACACACAGTATTGTCAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGCGTGTGTGATCTTCCATGATGTTACACACACCCGGTTACAGGGCCTGGCATTCCAGTTGGCAGATAAGCTGTCAATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGAATAGGAGGAGGACTAGATTTACCAATGAGGCGAAGAGACAACCAGGAATATGCTGCTGGAGCTGTAGGTGGTGGGGGTAGTAGGTGGCCAGACAACATGTCTTATAATCAAGGAAGGCAAGGTGGTGGTGGTTCGCGTGCAGGATATAGCAGTGGAGGACGAGGCCAAGGTGGGGGTGGTGGATATTCTAGAGACCGGGCGGGTCAGTCGCGAGGAGGCAATGCAGGATACCAAAGCACCCGTTATCAAGATGCCGCGTATGGATCGGGGAGGACTGCTTATCAGTCTGGTTCTGTCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTCATGCTTAA 2823 45.13 MASRFWTQGGGSGSDSEAEESDYDEEIDDLPTDPSSQPNRSRYLQGNASDSDDSDKDKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKDEELESEEEDDDDSEIEEDPSKIMSGSEDEDEEEAQEDGPGPGGNWVIQLSKRDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVHNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDANEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRTFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDGVLEMVKGKIKEEALRTYLLTYSSSYDSLSSEQLTRMFDLADGQTHSIVSKMMINEELHASWDQPSACVIFHDVTHTRLQGLAFQLADKLSILAETNERAVEARIGGGLDLPMRRRDNQEYAAGAVGGGGSRWPDNMSYNQGRQGGGGSRAGYSSGGRGQGGGGGYSRDRAGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSVRGSQMDASARMVSLNKGVHA 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5485396 5490185 + Maker00002749 Lcy6g0578 635022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0578 940 MobiDBLite consensus disorder prediction 139 157 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 49 74 - -
Lcy6g0578 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 139 228 - -
Lcy6g0578 940 SUPERFAMILY Winged helix DNA-binding domain 719 792 IPR036390 -
Lcy6g0578 940 Pfam PCI domain 719 790 IPR000717 -
Lcy6g0578 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lcy6g0578 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 892 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Lcy6g0578 940 MobiDBLite consensus disorder prediction 178 219 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 1 74 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 1 15 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 158 177 - -
Lcy6g0578 940 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 17 31 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 840 904 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 851 865 - -
Lcy6g0578 940 Coils Coil 147 174 - -
Lcy6g0578 940 MobiDBLite consensus disorder prediction 32 48 - -
Lcy6g0578 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 653 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0578 K03252 - csv:101203990 1565.44