Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0580 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGTCGCCGCCCTAAGAAGGCGGCTCAGTCATCACCGTCGTCGCCGCCTCAGCCACCTCCACCGATTGGTGTCAGTTCTCCTCCTATTAACAATAATAGCAGCGGCTTGGTTGGCGGTGGTGGTGGTGGTGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTGGACAGGTGGGGGCAGTCGGAGCTTGCAGAGTGGGACAAGGGCGCAATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGAATTCTTGGTCCTGTTTTCTCCCACTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCGATAGTTACTGCTGAAGAAGTCCTGCTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGTTAAGGAAGCTACTTGTTAAGAAGAGTCCATCTCAGGGCCATGGGGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCACGGGGAGGAAAGTGGTTGCCAGTTTCGGAAGCTGTTGAAGGTGAAGCTGTTGAAGGTGTGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTAGAAAATGCGTTGGAAGTTGTGTGTATGTACTTAGATTCCAGTGTGGCAGACCTTGAGAGAGATGCTTATCCAGTCCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGCCCATATCTTTCCAATGTGGGACAAAGGCATCTTATACTGCCTTGGTCCCTAACAATTGCCCCTCCTTGGAAAGCCGACGTCTCGGCGGTTGTGCACGGCGACGCTTCACTCGGCTGGTTCCGGTCAGCCCCTCCGCCGCCACTCCTCTCCGAAGCCGTCGACCGCCGGCTCTGATACCAATTGTTAGTTGCATTGGAATTAGTGTAGAGGGGCAAGGGTTTGCTTGTGAGAGCATGATTTTGTATCTTTGTTCTGGAGTGAACTCGAGTTGGGAGAGTTACAGGCCTCTGGAAAGGTTGGAGAATATTGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGATTCAACAGTCCGATGCTCTGCTGGGAGGCGTGGCTTCCTACAGCTCCACTGCCATTGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGCGGAAGTGTGGTGACCAGCTATCTTTTGGATGATAATGACGTAGAGGATCTGGAGATGTTGCTTGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATTGATGACACCGAGGATTACGTCAATATACAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCGAGTTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGATATTCGGGTACTTTGTCGGAGGTACTTCAGCAGGTTGTTTGTTGATTTTCCTGCTTATTTTCGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCATGA 1680 48.33 MGKGPFSFRRSSSRRRPKKAAQSSPSSPPQPPPPIGVSSPPINNNSSGLVGGGGGGAVGKVKKKAGGARLWMRLDRWGQSELAEWDKGAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLVKKSPSQGHGDGTVDERENDVNVSRGGKWLPVSEAVEGEAVEGVQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKPISFQCGTKASYTALVPNNCPSLESRRLGGCARRRFTRLVPVSPSAATPLRSRRPPALIPIVSCIGISVEGQGFACESMILYLCSGVNSSWESYRPLERLENIVRDEIEHLLDDNEDMAQLYLTRKWMQIQQSDALLGGVASYSSTAIVPHLRRLSSTRSGSVVTSYLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIASLFGMNIPCTLYETDGIFGYFVGGTSAGCLLIFLLIFGYARWKKLLGS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5498087 5506310 + Maker00002498 Lcy6g0580 635024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0580 559 MobiDBLite consensus disorder prediction 1 58 - -
Lcy6g0580 559 FunFam Magnesium transporter MRS2-1 59 142 - -
Lcy6g0580 559 Pfam Magnesium transporter MRS2-like 83 146 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 189 272 - -
Lcy6g0580 559 CDD Mrs2_Mfm1p-like 71 556 IPR039204 -
Lcy6g0580 559 Gene3D - 59 142 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 497 557 - -
Lcy6g0580 559 MobiDBLite consensus disorder prediction 24 39 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 363 490 - -
Lcy6g0580 559 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 59 556 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy6g0580 559 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 495 546 IPR045863 -
Lcy6g0580 559 Pfam CorA-like Mg2+ transporter protein 432 550 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0580 K16075 - - csv:101203496 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1193 Lcy-Chr3:37242378 Lcy6g0580 Lcy-Chr6:5498087 4.80E-32 dispersed
Lcy4g0156 Lcy-Chr4:1999049 Lcy6g0580 Lcy-Chr6:5498087 1.56E-64 dispersed
Lcy6g0580 Lcy-Chr6:5498087 Lcy10g1712 Lcy-Chr10:41518998 7.46E-23 dispersed
Lcy6g0580 Lcy-Chr6:5498087 Lcy13g0329 Lcy-Chr13:3603206 5.22E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G16010 85.3 1.5e-207 719.5
Lcy13g1649 . 3 401 MRS2 Gene Family AT1G16010 50.6 4.2e-106 382.5
Lcy13g0329 . 1 400 MRS2 Gene Family AT5G64560 71.6 9.4e-147 517.3
Lcy12g2154 . 1 354 MRS2 Gene Family AT5G64560 65.3 1.1e-118 424.1
Lcy4g0156 . 14 497 MRS2 Gene Family AT3G19640 63.0 1.9e-152 536.6
Lcy6g0580 . 59 560 MRS2 Gene Family AT3G58970 54.3 6.6e-128 454.9
Lcy13g1649 . 5 401 MRS2 Gene Family AT2G03620 64.9 4.3e-132 468.8
Lcy12g0512 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.4e-113 406.0
Lcy13g0329 . 1 362 MRS2 Gene Family AT5G09690 65.1 1.6e-115 413.3
Lcy12g2154 . 1 316 MRS2 Gene Family AT5G09690 61.1 1.2e-97 354.0
Lcy12g0512 . 40 383 MRS2 Gene Family AT5G09690 50.6 9.3e-79 291.2
Lcy13g0329 . 23 315 MRS2 Gene Family AT5G09720 57.8 1.2e-77 287.3
Lcy12g2154 . 33 291 MRS2 Gene Family AT5G09720 60.2 9.7e-75 277.7
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G80900 83.0 1.7e-200 696.0
Lcy13g1649 . 1 401 MRS2 Gene Family AT1G80900 51.4 8.8e-104 374.8
Lcy5g1032 . 16 466 MRS2 Gene Family AT5G22830 67.1 3.0e-155 545.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47