Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0580 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGTCGCCGCCCTAAGAAGGCGGCTCAGTCATCACCGTCGTCGCCGCCTCAGCCACCTCCACCGATTGGTGTCAGTTCTCCTCCTATTAACAATAATAGCAGCGGCTTGGTTGGCGGTGGTGGTGGTGGTGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTGGACAGGTGGGGGCAGTCGGAGCTTGCAGAGTGGGACAAGGGCGCAATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGAATTCTTGGTCCTGTTTTCTCCCACTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCGATAGTTACTGCTGAAGAAGTCCTGCTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGTTAAGGAAGCTACTTGTTAAGAAGAGTCCATCTCAGGGCCATGGGGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCACGGGGAGGAAAGTGGTTGCCAGTTTCGGAAGCTGTTGAAGGTGAAGCTGTTGAAGGTGTGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTAGAAAATGCGTTGGAAGTTGTGTGTATGTACTTAGATTCCAGTGTGGCAGACCTTGAGAGAGATGCTTATCCAGTCCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGCCCATATCTTTCCAATGTGGGACAAAGGCATCTTATACTGCCTTGGTCCCTAACAATTGCCCCTCCTTGGAAAGCCGACGTCTCGGCGGTTGTGCACGGCGACGCTTCACTCGGCTGGTTCCGGTCAGCCCCTCCGCCGCCACTCCTCTCCGAAGCCGTCGACCGCCGGCTCTGATACCAATTGTTAGTTGCATTGGAATTAGTGTAGAGGGGCAAGGGTTTGCTTGTGAGAGCATGATTTTGTATCTTTGTTCTGGAGTGAACTCGAGTTGGGAGAGTTACAGGCCTCTGGAAAGGTTGGAGAATATTGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGATTCAACAGTCCGATGCTCTGCTGGGAGGCGTGGCTTCCTACAGCTCCACTGCCATTGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGCGGAAGTGTGGTGACCAGCTATCTTTTGGATGATAATGACGTAGAGGATCTGGAGATGTTGCTTGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATTGATGACACCGAGGATTACGTCAATATACAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCGAGTTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGATATTCGGGTACTTTGTCGGAGGTACTTCAGCAGGTTGTTTGTTGATTTTCCTGCTTATTTTCGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCATGA 1680 48.33 MGKGPFSFRRSSSRRRPKKAAQSSPSSPPQPPPPIGVSSPPINNNSSGLVGGGGGGAVGKVKKKAGGARLWMRLDRWGQSELAEWDKGAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLVKKSPSQGHGDGTVDERENDVNVSRGGKWLPVSEAVEGEAVEGVQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKPISFQCGTKASYTALVPNNCPSLESRRLGGCARRRFTRLVPVSPSAATPLRSRRPPALIPIVSCIGISVEGQGFACESMILYLCSGVNSSWESYRPLERLENIVRDEIEHLLDDNEDMAQLYLTRKWMQIQQSDALLGGVASYSSTAIVPHLRRLSSTRSGSVVTSYLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIASLFGMNIPCTLYETDGIFGYFVGGTSAGCLLIFLLIFGYARWKKLLGS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5498087 5506310 + Maker00002498 Lcy6g0580 635024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0580 559 MobiDBLite consensus disorder prediction 1 58 - -
Lcy6g0580 559 FunFam Magnesium transporter MRS2-1 59 142 - -
Lcy6g0580 559 Pfam Magnesium transporter MRS2-like 83 146 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 189 272 - -
Lcy6g0580 559 CDD Mrs2_Mfm1p-like 71 556 IPR039204 -
Lcy6g0580 559 Gene3D - 59 142 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 497 557 - -
Lcy6g0580 559 MobiDBLite consensus disorder prediction 24 39 - -
Lcy6g0580 559 Gene3D Magnesium transport protein CorA, transmembrane region 363 490 - -
Lcy6g0580 559 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 59 556 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy6g0580 559 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 495 546 IPR045863 -
Lcy6g0580 559 Pfam CorA-like Mg2+ transporter protein 432 550 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1193 Lcy-Chr3:37242378 Lcy6g0580 Lcy-Chr6:5498087 4.80E-32 dispersed
Lcy4g0156 Lcy-Chr4:1999049 Lcy6g0580 Lcy-Chr6:5498087 1.56E-64 dispersed
Lcy6g0580 Lcy-Chr6:5498087 Lcy10g1712 Lcy-Chr10:41518998 7.46E-23 dispersed
Lcy6g0580 Lcy-Chr6:5498087 Lcy13g0329 Lcy-Chr13:3603206 5.22E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0580 K16075 - csv:101203496 351.673