Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0583 ATGGAGAACCAGTTCTTTGCTGTTTTCCAAAGAAACCCATGTTCGTTTCTGGATCAAAGACCAAATGTTGTGCTCTTTCTTTTGATCTTCTTCTCTCTCACCTGCTCCTTCTCACCCTCCGATGGATATGACTCGTTGGACCCTTATGCCAACGTTACAATCACATGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTATACAATTTCCAACTGTTTCGCCATGTGGAGCTCCCCGGTTGGAAACTTGGTTGGTCATGGAAAGGTGATGAGGTTATATGGGGCATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCTAAATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTACAGGTGGCCAATTGTTGTAAAGGTGGTGTGCTATCTTCCATGAGACAAGACCCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTGCTGGAAAGGATGTAGATAGCAAAATGCCTGCAAATTTCACTCTGGGGCTTCCTGGATATACTTGTAGTGACCCTTTTCAAGTCTCTCCAACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGCGTTTACTCACAATTTCGATCATCACCGTCACCGAGGTGCTGTGTTTCTTTGTCGTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAGAGGGAACAAAATGTGTCAAGTCGGGTGAAACTCCTTCAGTTTTGCAACTGCCACATGAACATTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACCACACATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAATTTTGCTAAGAATTACTCTCAATGGAACTTAGTAGCGATGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTATAGCCCCCTCAATCAGTATGGTAACATTAATGACACAGGGATGTTTTGGGGGATACACTTCTACAATGACTTGTTACTCACATCAGGAGAGAGAGGAAATGTTCAAACAGAGATGCTTCTCCGAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAAGCTCACAGGGCCATGGCAGCCTCATACATAGTTTTCTTCTTCTTGTTTCTCTCTGTATTATTATAA 1368 43.79 MENQFFAVFQRNPCSFLDQRPNVVLFLLIFFSLTCSFSPSDGYDSLDPYANVTITWDFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKGDEVIWGMWGAEATQQGNCSKYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGAAFQMNVGKSAGKDVDSKMPANFTLGLPGYTCSDPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFRSSPSPRCCVSLSSFYNSTIVPCPQCSCGCQGLEGTKCVKSGETPSVLQLPHEHYTAEVEPLVRCSPHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWNLVAMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEMLLRKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHRAMAASYIVFFFLFLSVLL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5520833 5524289 - Maker00002402 Lcy6g0583 635027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0583 455 PANTHER PROTEIN COBRA 28 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy6g0583 455 PIRSF COBRA 16 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy6g0583 455 Pfam COBRA-like protein 66 228 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0926 Lcy-Chr3:32577282 Lcy6g0583 Lcy-Chr6:5520833 6.17E-125 dispersed
Lcy5g2474 Lcy-Chr5:47482896 Lcy6g0583 Lcy-Chr6:5520833 8.69E-132 dispersed
Lcy6g0583 Lcy-Chr6:5520833 Lcy2g0498 Lcy-Chr2:4281585 2.39E-166 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0583 - - - 0.0