Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0602 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAAGATAGCAAGGAAAGTCCAAGGGAGAGGTTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTATCGATCTAAAGATCAGCATGATGGTAATGATGCAAGAGTGATGTTGATTGACAAGCAGGTGAATGGGTCAGGTCGACTCCAGGGTGAGAATTTTGACAGGAAGAGGGAGAAGATGGAGGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCGACAGAGGGGGACCACGTTGCTGCAGGATGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTAGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGTGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTATATGGAACATGACTTAGCAGGACTTGCTTCTCACCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTCTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATAATGGTATCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCACTAACAAGCAGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTATGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAACCCATTATGCCGGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTTTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACGATATTTAAGCCCCAACAGCCATATAGACGCTGTGTTGCAGAAACATTTAAGGATTTCCCCGCACCAGCTTTAGCTCTCATCGAGACATTACTCTCAATAGATCCTGCTGATCGTGGCTCTGCCGCTCTTGCCCTTAAAAGCGAGTTTTTCTCAACAAAGCCACTTCCATGTGATCCTTCAAGTTTGCCAAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGATCTGCAGAGGAAAGATAGAGAATCTCGAGCTGTCCCTGCACCTGATGCCAATGCTGAGTTAGCCTCATCGATGCAGAAAAGACAAGGCCAGTCCAATTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCGCCTCGTCCTTCACAAGGAGTGGAAAGAATGGATTCTCAGGTGCGTCATCCAAAGAAAGCCTCACATTCAGGACCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGACGCTCCCAAAATCTCAACTGGGGCCGAAAATTTCGCCACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTCCAGGGAAAAGTCTGACTCTTCACATGGAGAGGTTCAAAAACTAATTGGCAGGTTTCCTGGGTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCAGATCAGAAGTTCTCAAATCACAGTATTGTAGGCTCGCACGACAAAGAGAGGAGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTAAAGGACCATGATCGCCATATTCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGAAAGGTTCAAGCTGACGGGAAACAGATGTCAACGAATTCATTATTCGTCTCCGGTCGTTAA 2115 45.82 MGCVCCKPSAIEDSKESPRERLSSKTSSDLRVARVTSSSREEAYRSKDQHDGNDARVMLIDKQVNGSGRLQGENFDRKREKMEAQHPSMGRIPKATEGDHVAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVAETFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGVERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDAPKISTGAENFATSGLVAARRSMLAEDSREKSDSSHGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGR 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5733147 5742156 + Maker00002353 Lcy6g0602 635046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0602 704 MobiDBLite consensus disorder prediction 35 54 - -
Lcy6g0602 704 PANTHER CELL DIVISION PROTEIN KINASE 127 412 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy6g0602 704 FunFam probable serine/threonine-protein kinase At1g54610 115 210 - -
Lcy6g0602 704 Gene3D Transferase(Phosphotransferase) domain 1 211 451 - -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 441 468 - -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 1 54 - -
Lcy6g0602 704 SMART serkin_6 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0602 704 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Lcy6g0602 704 Pfam Protein kinase domain 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0602 704 CDD STKc_CDK9_like 128 412 - -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 681 704 - -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 441 559 - -
Lcy6g0602 704 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0602 704 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524(InterPro)
Lcy6g0602 704 MobiDBLite consensus disorder prediction 690 704 - -
Lcy6g0602 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0602 704 FunFam probable serine/threonine-protein kinase At1g54610 211 452 - -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 12 27 - -
Lcy6g0602 704 SUPERFAMILY Protein kinase-like (PK-like) 122 420 IPR011009 -
Lcy6g0602 704 MobiDBLite consensus disorder prediction 477 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1834 Lcy-Chr2:31184311 Lcy6g0602 Lcy-Chr6:5733147 8.84E-207 dispersed
Lcy5g2098 Lcy-Chr5:44056799 Lcy6g0602 Lcy-Chr6:5733147 1.01E-216 dispersed
Lcy5g2517 Lcy-Chr5:47946824 Lcy6g0602 Lcy-Chr6:5733147 9.36E-191 dispersed
Lcy6g0602 Lcy-Chr6:5733147 Lcy8g1544 Lcy-Chr8:42067045 1.36E-244 dispersed
Lcy6g0602 Lcy-Chr6:5733147 Lcy7g1665 Lcy-Chr7:32912490 1.42E-216 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66015 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0602 - - - 0.0