Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0610 | ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGCTGAATCTTCTCAAACCGACTTTCGTCAAATGGATATTGTTGAGTTGCTTGCTTTCTTTTTCTTTGGGTCTGAAACCGCCCAATCAAGTCTGTGATCCAAAGGATTTACTGGCATTGAGGGGCTTTGTGGAAAGTCTTGCAAATAGCTCTATTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTCGATTGTGGATATGATGGCAACAGCTCTCTCGCTAACAGAGTTACCAAGTTAGTACTGCCTAACATGAATCTGAAAGGCAAAATTTCACAATCTCTTGGTGGTTTGGATCAGTTAATTTGGCTAAATCTGTCATACAATCAGCTTGAAGGTGTACTGCCAACAGAACTCTCAAGCTTGAAGCAGCTCCAAGTTTTGGATTTGAGCTACAATAACCTGTCAGGACCAGTCACCAATGCAACTTCAGGATTGAAATCTGTTCATATTCTGAATATTTCAAGCAATTCATTCATTGTGGATTTTCCCCAGCTTATGGGGTTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCAAGTTTTCTTCACAGATTTGCAATTCCTCCAACATGATTCAGGTTGTTGATATATCAGCGAACCGAATACCTGGCGATCTTCGTGGTGTGTACAATTGCAGCAAATCTCTCAAACATTTCCGTGCAGACGATAACTTACTTAGCGGCCATCTTCCAGATTCGTTGTATTCGTTATCATCTTTGGAGTACTTTTCAATCCCTGGGAACAGCTTCCTTGGCCAGTTGAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTCATAATATTTGGAAACCAGTTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAATTACAGGAGTTAGTTGCACATTCTAACTTGTTCTCTGGAATACTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGGAATAATTCTTTAACTGGCACTATAGATCTTAATTTTTCCAGGCTACCAGATCTCCAAACGCTTGATCTAGCCTCTAATCACTTTTCTGGGCCTCTACCAAAGTCTCTATCTGATTGTCATGAATTGAAAACGCTTAGCCTTGCCAAAAACAAGTTGACTGGTCAAATTCCTCGAGATTATGCAAAGCTTTCCTCACTGTCCTTTCTATCTTTGTCGAACAACAGTATTATAAACTTGGGTGGAGCATTATCTGTTCTACAAAATTGCAAAAACCTGACTGTTCTTATTCTTACTAAGAACTTTCGTAATGAGGAAATTCCACAGAGTGAAACTGTTTTCGAGAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACCAATTCCAGGTTGGTTACTAGGTTGCAAGAAATTAAGCATCCTCGATTTGTCTTGGAATCACTTGAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGACAATCTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAGAAGCTTGACACAGATGAAAGCACTCATTTCCAAAAACTGCAGCTTGTCTGGTTCGACATCGTCGGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTTCCACTGGTTTGCAATACAACCAAGCATCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATAAATGGAACTATTTTTCCAGAAATTGGTAGATTAAAATGGCTGCATGTCTTGGATTTGAGTAGGAATAATATTACTGGGTCCATTCCGAGCAACATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACGGATTCCTCCATCATTCAACAAACTCACATTCTTGTCAAGGTTCAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGACAATTCTTAAGCTTTCCCACCTCCAGCTTTGAGGGTAATGCTGGACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGGGTCAAGAACAAAACCTGAAGCTTCTGCTGAGTCGAAGAGAAAAGTCGGTAGAAACATCATTCTTTGCCTTACTGTTGGTGCAGCTGCAGCAGTTCTCCTGCTGCTCACAGTGGTTCTACTCAAAATGTCCAAGAAAGATATTGGAGATCGAAATAACAGTTTTGACGACGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTTTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACCTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGAGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAAAGAGAATTCCAAGCTGAAGTTGAAGCTCTTTCTAGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGATTGTCGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCTGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCAAACATAATTCACCGAGACGTAAAATCGAGCAACATACTTCTAGATGACAGATTTGAAGCTCATTTAGCTGATTTTGGTCTTTCAAGATTACTCCGGCCGTATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACCTGCAGGGGCGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAGCTGCTTACTGGCCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGCGATTCAGAAGAAATCAGAAAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGATACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG | 3168 | 41.07 | MRSLLVSEVMVLNLLKPTFVKWILLSCLLSFSLGLKPPNQVCDPKDLLALRGFVESLANSSILSVWLNESNCCNWDGVDCGYDGNSSLANRVTKLVLPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTELSSLKQLQVLDLSYNNLSGPVTNATSGLKSVHILNISSNSFIVDFPQLMGFQNLVAFNISNNSFTGKFSSQICNSSNMIQVVDISANRIPGDLRGVYNCSKSLKHFRADDNLLSGHLPDSLYSLSSLEYFSIPGNSFLGQLSMELSKLSRLKSFIIFGNQFSGELPNVFGNFSELQELVAHSNLFSGILPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPDLQTLDLASNHFSGPLPKSLSDCHELKTLSLAKNKLTGQIPRDYAKLSSLSFLSLSNNSIINLGGALSVLQNCKNLTVLILTKNFRNEEIPQSETVFENLMLLAFGNCGLRGPIPGWLLGCKKLSILDLSWNHLNGSIPAWIGQLDNLFYLDLSNNSLTGEIPRSLTQMKALISKNCSLSGSTSSAGIPLFVKRNQSSTGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGSIPSNISEMENLETLDLSNNDLYGRIPPSFNKLTFLSRFSVANNHLEGPIPNGGQFLSFPTSSFEGNAGLCGEIDNPCHSVDGSRTKPEASAESKRKVGRNIILCLTVGAAAAVLLLLTVVLLKMSKKDIGDRNNSFDDEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWAIQKKSEKREEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL | 1055 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5821023 | 5824190 | + | Maker00004260 | Lcy6g0610 | 635054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0610 | 1055 | PRINTS | Leucine-rich repeat signature | 609 | 622 | - | - | |
Lcy6g0610 | 1055 | PRINTS | Leucine-rich repeat signature | 502 | 515 | - | - | |
Lcy6g0610 | 1055 | SUPERFAMILY | L domain-like | 448 | 652 | - | - | |
Lcy6g0610 | 1055 | Pfam | Leucine Rich Repeat | 611 | 633 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g0610 | 1055 | Pfam | Leucine Rich Repeat | 588 | 608 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g0610 | 1055 | Pfam | Leucine Rich Repeat | 331 | 353 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g0610 | 1055 | Pfam | Leucine Rich Repeat | 356 | 377 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g0610 | 1055 | SMART | serkin_6 | 779 | 1050 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0610 | 1055 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 901 | 913 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 353 | 377 | IPR003591 | - | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 137 | 160 | IPR003591 | - | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 499 | 523 | IPR003591 | - | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 609 | 632 | IPR003591 | - | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 401 | 424 | IPR003591 | - | |
Lcy6g0610 | 1055 | SMART | LRR_typ_2 | 113 | 136 | IPR003591 | - | |
Lcy6g0610 | 1055 | Gene3D | Transferase(Phosphotransferase) domain 1 | 855 | 1054 | - | - | |
Lcy6g0610 | 1055 | Gene3D | Ribonuclease Inhibitor | 378 | 682 | IPR032675 | - | |
Lcy6g0610 | 1055 | SUPERFAMILY | L domain-like | 42 | 321 | - | - | |
Lcy6g0610 | 1055 | PANTHER | OS04G0122200 PROTEIN | 423 | 1047 | IPR051809 | - | |
Lcy6g0610 | 1055 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 350 | 683 | - | - | |
Lcy6g0610 | 1055 | FunFam | Leucine-rich repeat receptor-like kinase | 46 | 165 | - | - | |
Lcy6g0610 | 1055 | CDD | STKc_IRAK | 785 | 1046 | - | - | |
Lcy6g0610 | 1055 | Gene3D | Ribonuclease Inhibitor | 40 | 273 | IPR032675 | - | |
Lcy6g0610 | 1055 | ProSiteProfiles | Protein kinase domain profile. | 779 | 1050 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0610 | 1055 | Gene3D | Phosphorylase Kinase; domain 1 | 748 | 854 | - | - | |
Lcy6g0610 | 1055 | FunFam | Phytosulfokine receptor 1 | 742 | 854 | - | - | |
Lcy6g0610 | 1055 | FunFam | Leucine-rich repeat receptor-like protein kinase | 855 | 1055 | - | - | |
Lcy6g0610 | 1055 | Gene3D | Ribonuclease Inhibitor | 274 | 376 | IPR032675 | - | |
Lcy6g0610 | 1055 | SUPERFAMILY | Protein kinase-like (PK-like) | 760 | 1050 | IPR011009 | - | |
Lcy6g0610 | 1055 | SUPERFAMILY | L domain-like | 236 | 517 | - | - | |
Lcy6g0610 | 1055 | Pfam | Protein kinase domain | 780 | 1046 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0610 | 1055 | ProSitePatterns | Protein kinases ATP-binding region signature. | 785 | 807 | IPR017441 | GO:0005524(InterPro) | |
Lcy6g0610 | 1055 | Pfam | Leucine rich repeat N-terminal domain | 44 | 80 | IPR013210 | - | |
Lcy6g0610 | 1055 | Pfam | Leucine rich repeat | 91 | 150 | IPR001611 | GO:0005515(InterPro) | |
Lcy6g0610 | 1055 | Pfam | Leucine rich repeat | 454 | 512 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1364 | Lcy-Chr10:36832151 | Lcy6g0610 | Lcy-Chr6:5821023 | 6.08E-71 | dispersed | |
Lcy10g1562 | Lcy-Chr10:39972496 | Lcy6g0610 | Lcy-Chr6:5821023 | 5.62E-27 | dispersed | |
Lcy3g1969 | Lcy-Chr3:46840618 | Lcy6g0610 | Lcy-Chr6:5821023 | 2.56E-146 | dispersed | |
Lcy6g0180 | Lcy-Chr6:1630080 | Lcy6g0610 | Lcy-Chr6:5821023 | 1.86E-47 | dispersed | |
Lcy6g0610 | Lcy-Chr6:5821023 | Lcy7g0396 | Lcy-Chr7:3370972 | 6.54E-73 | dispersed | |
Lcy6g0610 | Lcy-Chr6:5821023 | Lcy7g1441 | Lcy-Chr7:24257963 | 3.04E-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66016 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0610 | K27626 | - | cit:102609589 | 1396.72 |