Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0610 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGCTGAATCTTCTCAAACCGACTTTCGTCAAATGGATATTGTTGAGTTGCTTGCTTTCTTTTTCTTTGGGTCTGAAACCGCCCAATCAAGTCTGTGATCCAAAGGATTTACTGGCATTGAGGGGCTTTGTGGAAAGTCTTGCAAATAGCTCTATTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTCGATTGTGGATATGATGGCAACAGCTCTCTCGCTAACAGAGTTACCAAGTTAGTACTGCCTAACATGAATCTGAAAGGCAAAATTTCACAATCTCTTGGTGGTTTGGATCAGTTAATTTGGCTAAATCTGTCATACAATCAGCTTGAAGGTGTACTGCCAACAGAACTCTCAAGCTTGAAGCAGCTCCAAGTTTTGGATTTGAGCTACAATAACCTGTCAGGACCAGTCACCAATGCAACTTCAGGATTGAAATCTGTTCATATTCTGAATATTTCAAGCAATTCATTCATTGTGGATTTTCCCCAGCTTATGGGGTTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCAAGTTTTCTTCACAGATTTGCAATTCCTCCAACATGATTCAGGTTGTTGATATATCAGCGAACCGAATACCTGGCGATCTTCGTGGTGTGTACAATTGCAGCAAATCTCTCAAACATTTCCGTGCAGACGATAACTTACTTAGCGGCCATCTTCCAGATTCGTTGTATTCGTTATCATCTTTGGAGTACTTTTCAATCCCTGGGAACAGCTTCCTTGGCCAGTTGAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTCATAATATTTGGAAACCAGTTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAATTACAGGAGTTAGTTGCACATTCTAACTTGTTCTCTGGAATACTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGGAATAATTCTTTAACTGGCACTATAGATCTTAATTTTTCCAGGCTACCAGATCTCCAAACGCTTGATCTAGCCTCTAATCACTTTTCTGGGCCTCTACCAAAGTCTCTATCTGATTGTCATGAATTGAAAACGCTTAGCCTTGCCAAAAACAAGTTGACTGGTCAAATTCCTCGAGATTATGCAAAGCTTTCCTCACTGTCCTTTCTATCTTTGTCGAACAACAGTATTATAAACTTGGGTGGAGCATTATCTGTTCTACAAAATTGCAAAAACCTGACTGTTCTTATTCTTACTAAGAACTTTCGTAATGAGGAAATTCCACAGAGTGAAACTGTTTTCGAGAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACCAATTCCAGGTTGGTTACTAGGTTGCAAGAAATTAAGCATCCTCGATTTGTCTTGGAATCACTTGAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGACAATCTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAGAAGCTTGACACAGATGAAAGCACTCATTTCCAAAAACTGCAGCTTGTCTGGTTCGACATCGTCGGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTTCCACTGGTTTGCAATACAACCAAGCATCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATAAATGGAACTATTTTTCCAGAAATTGGTAGATTAAAATGGCTGCATGTCTTGGATTTGAGTAGGAATAATATTACTGGGTCCATTCCGAGCAACATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACGGATTCCTCCATCATTCAACAAACTCACATTCTTGTCAAGGTTCAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGACAATTCTTAAGCTTTCCCACCTCCAGCTTTGAGGGTAATGCTGGACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGGGTCAAGAACAAAACCTGAAGCTTCTGCTGAGTCGAAGAGAAAAGTCGGTAGAAACATCATTCTTTGCCTTACTGTTGGTGCAGCTGCAGCAGTTCTCCTGCTGCTCACAGTGGTTCTACTCAAAATGTCCAAGAAAGATATTGGAGATCGAAATAACAGTTTTGACGACGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTTTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACCTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGAGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAAAGAGAATTCCAAGCTGAAGTTGAAGCTCTTTCTAGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGATTGTCGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCTGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCAAACATAATTCACCGAGACGTAAAATCGAGCAACATACTTCTAGATGACAGATTTGAAGCTCATTTAGCTGATTTTGGTCTTTCAAGATTACTCCGGCCGTATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACCTGCAGGGGCGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAGCTGCTTACTGGCCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGCGATTCAGAAGAAATCAGAAAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGATACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 3168 41.07 MRSLLVSEVMVLNLLKPTFVKWILLSCLLSFSLGLKPPNQVCDPKDLLALRGFVESLANSSILSVWLNESNCCNWDGVDCGYDGNSSLANRVTKLVLPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTELSSLKQLQVLDLSYNNLSGPVTNATSGLKSVHILNISSNSFIVDFPQLMGFQNLVAFNISNNSFTGKFSSQICNSSNMIQVVDISANRIPGDLRGVYNCSKSLKHFRADDNLLSGHLPDSLYSLSSLEYFSIPGNSFLGQLSMELSKLSRLKSFIIFGNQFSGELPNVFGNFSELQELVAHSNLFSGILPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPDLQTLDLASNHFSGPLPKSLSDCHELKTLSLAKNKLTGQIPRDYAKLSSLSFLSLSNNSIINLGGALSVLQNCKNLTVLILTKNFRNEEIPQSETVFENLMLLAFGNCGLRGPIPGWLLGCKKLSILDLSWNHLNGSIPAWIGQLDNLFYLDLSNNSLTGEIPRSLTQMKALISKNCSLSGSTSSAGIPLFVKRNQSSTGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGSIPSNISEMENLETLDLSNNDLYGRIPPSFNKLTFLSRFSVANNHLEGPIPNGGQFLSFPTSSFEGNAGLCGEIDNPCHSVDGSRTKPEASAESKRKVGRNIILCLTVGAAAAVLLLLTVVLLKMSKKDIGDRNNSFDDEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWAIQKKSEKREEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1055
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5821023 5824190 + Maker00004260 Lcy6g0610 635054
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0610 1055 PRINTS Leucine-rich repeat signature 609 622 - -
Lcy6g0610 1055 PRINTS Leucine-rich repeat signature 502 515 - -
Lcy6g0610 1055 SUPERFAMILY L domain-like 448 652 - -
Lcy6g0610 1055 Pfam Leucine Rich Repeat 611 633 IPR001611 GO:0005515(InterPro)
Lcy6g0610 1055 Pfam Leucine Rich Repeat 588 608 IPR001611 GO:0005515(InterPro)
Lcy6g0610 1055 Pfam Leucine Rich Repeat 331 353 IPR001611 GO:0005515(InterPro)
Lcy6g0610 1055 Pfam Leucine Rich Repeat 356 377 IPR001611 GO:0005515(InterPro)
Lcy6g0610 1055 SMART serkin_6 779 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0610 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0610 1055 SMART LRR_typ_2 353 377 IPR003591 -
Lcy6g0610 1055 SMART LRR_typ_2 137 160 IPR003591 -
Lcy6g0610 1055 SMART LRR_typ_2 499 523 IPR003591 -
Lcy6g0610 1055 SMART LRR_typ_2 609 632 IPR003591 -
Lcy6g0610 1055 SMART LRR_typ_2 401 424 IPR003591 -
Lcy6g0610 1055 SMART LRR_typ_2 113 136 IPR003591 -
Lcy6g0610 1055 Gene3D Transferase(Phosphotransferase) domain 1 855 1054 - -
Lcy6g0610 1055 Gene3D Ribonuclease Inhibitor 378 682 IPR032675 -
Lcy6g0610 1055 SUPERFAMILY L domain-like 42 321 - -
Lcy6g0610 1055 PANTHER OS04G0122200 PROTEIN 423 1047 IPR051809 -
Lcy6g0610 1055 FunFam Tyrosine-sulfated glycopeptide receptor 1 350 683 - -
Lcy6g0610 1055 FunFam Leucine-rich repeat receptor-like kinase 46 165 - -
Lcy6g0610 1055 CDD STKc_IRAK 785 1046 - -
Lcy6g0610 1055 Gene3D Ribonuclease Inhibitor 40 273 IPR032675 -
Lcy6g0610 1055 ProSiteProfiles Protein kinase domain profile. 779 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0610 1055 Gene3D Phosphorylase Kinase; domain 1 748 854 - -
Lcy6g0610 1055 FunFam Phytosulfokine receptor 1 742 854 - -
Lcy6g0610 1055 FunFam Leucine-rich repeat receptor-like protein kinase 855 1055 - -
Lcy6g0610 1055 Gene3D Ribonuclease Inhibitor 274 376 IPR032675 -
Lcy6g0610 1055 SUPERFAMILY Protein kinase-like (PK-like) 760 1050 IPR011009 -
Lcy6g0610 1055 SUPERFAMILY L domain-like 236 517 - -
Lcy6g0610 1055 Pfam Protein kinase domain 780 1046 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0610 1055 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524(InterPro)
Lcy6g0610 1055 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Lcy6g0610 1055 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Lcy6g0610 1055 Pfam Leucine rich repeat 454 512 IPR001611 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1364 Lcy-Chr10:36832151 Lcy6g0610 Lcy-Chr6:5821023 6.08E-71 dispersed
Lcy10g1562 Lcy-Chr10:39972496 Lcy6g0610 Lcy-Chr6:5821023 5.62E-27 dispersed
Lcy3g1969 Lcy-Chr3:46840618 Lcy6g0610 Lcy-Chr6:5821023 2.56E-146 dispersed
Lcy6g0180 Lcy-Chr6:1630080 Lcy6g0610 Lcy-Chr6:5821023 1.86E-47 dispersed
Lcy6g0610 Lcy-Chr6:5821023 Lcy7g0396 Lcy-Chr7:3370972 6.54E-73 dispersed
Lcy6g0610 Lcy-Chr6:5821023 Lcy7g1441 Lcy-Chr7:24257963 3.04E-160 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66016 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0610 K27626 - cit:102609589 1396.72