Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0627 ATGTACATTGATGCAGCCATGCTTCTTCTCTCTATTCCTTTTCTTGCATTCTACTTAACCTTCTATTTCTACTCCCTCTCGCCTCCGATGCTGGACGCTATCTGTTTCTTGTCCTCTGCATTCTGGTTGAATACGGATGAGTCCAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACATGTTACAAGCAATGGGGAACAGTTATTGTGGTACATGTAGAGACAGGAAAATCCAATGGTTCCTTAAATGTAAAGAGTGAAGATCTAGCTGCGACTCGAATTCAAAATGCATTTCGAGCATTTGCGGCCAGAAAGATTGTACATAATTCGAAAGGGCCAGAGAGATGCCAGGATCTAATTCAAGGTGAAATGGCTACAAAACAGGTGTTGAGCTTCATTCATTCATGGAGCAAAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCAGAAGCTTGAGGCTAAGATTCATGAACTTGAGGTAGAATGGTGCGGTGGGTCTGAAACAAAAGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTTAAACGGGAGCGAGCCATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAACTCCATCTTGGATCTAAATCCGGCTTCATACAGCCTTGACAAAGAAAACTGGGGATGGAGTTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATCCCAAAGAAGGTGCAGACGAAGCAAACAAGCAAACTCAATAAAGTCACGACACATCAACCGTCATTGAAGGTCTCGAACTCAGCCAGACTTTCTTCGTCAAACAGTAAGGGGAGTTCAAAGGCCAGAAACTCTGCTATACCCAACTGCTGA 933 43.94 MYIDAAMLLLSIPFLAFYLTFYFYSLSPPMLDAICFLSSAFWLNTDESSKLFLDNIQATEGETCYKQWGTVIVVHVETGKSNGSLNVKSEDLAATRIQNAFRAFAARKIVHNSKGPERCQDLIQGEMATKQVLSFIHSWSKMQQEIRARRLCMVTEYRVKQKKLENQQKLEAKIHELEVEWCGGSETKEEILFKIQQREEAAVKRERAMAYAFSHQWRANSILDLNPASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQTKQTSKLNKVTTHQPSLKVSNSARLSSSNSKGSSKARNSAIPNC 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5971289 5980594 + Maker00004207 Lcy6g0627 635071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0627 310 ProSiteProfiles IQ motif profile. 90 118 - -
Lcy6g0627 310 MobiDBLite consensus disorder prediction 260 310 - -
Lcy6g0627 310 Coils Coil 160 180 - -
Lcy6g0627 310 MobiDBLite consensus disorder prediction 258 310 - -
Lcy6g0627 310 PANTHER IQ-DOMAIN 5-RELATED 81 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0627 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0627 Lcy-Chr6:5971289 Lcy7g0669 Lcy-Chr7:6192034 1.84E-28 dispersed
Lcy6g0627 Lcy-Chr6:5971289 Lcy1g0290 Lcy-Chr1:2611003 4.23E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30