Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0640 | ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGCTAAGTCACATTCGAGAGAGAGACCTACCGAGACAAAAGTTAAACCGTTGTCTGAAAGGGAATTATCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCCTGTCTATACAAGGTGGATCTGGGGACTTCATGACAGATAGAACATTGCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAATTTTGAGAGCTGGTGACGTTGAACTGGACGACGACGATGAGTGCTCGGGTCATGTTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAGGGTTCAACATTGCTCACATAACGGTACATTCTCGAAACGAAGGAGGCAGTTCTAG | 891 | 47.81 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSRERPTETKVKPLSERELSMPSPGELSRSLSIQGGSGDFMTDRTLLTGDSVSGGFSQWQMDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPILRAGDVELDDDDECSGHVPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSERVQHCSHNGTFSKRRRQF | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6095079 | 6098035 | + | Maker00004253 | Lcy6g0640 | 635084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0640 | 296 | CDD | Bbox1_BBX-like | 56 | 99 | IPR049808 | - | |
Lcy6g0640 | 296 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 277 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Lcy6g0640 | 296 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - | |
Lcy6g0640 | 296 | MobiDBLite | consensus disorder prediction | 226 | 247 | - | - | |
Lcy6g0640 | 296 | Pfam | B-box zinc finger | 3 | 47 | IPR000315 | GO:0008270(InterPro) | |
Lcy6g0640 | 296 | Pfam | B-box zinc finger | 53 | 96 | IPR000315 | GO:0008270(InterPro) | |
Lcy6g0640 | 296 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Lcy6g0640 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Lcy6g0640 | 296 | MobiDBLite | consensus disorder prediction | 115 | 150 | - | - | |
Lcy6g0640 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Lcy6g0640 | 296 | MobiDBLite | consensus disorder prediction | 121 | 135 | - | - | |
Lcy6g0640 | 296 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Lcy6g0640 | 296 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Lcy6g0640 | 296 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0650 | Lcy-Chr1:5566956 | Lcy6g0640 | Lcy-Chr6:6095079 | 1.64E-22 | dispersed | |
Lcy3g1220 | Lcy-Chr3:37646038 | Lcy6g0640 | Lcy-Chr6:6095079 | 7.21E-41 | dispersed | |
Lcy6g0640 | Lcy-Chr6:6095079 | Lcy8g1159 | Lcy-Chr8:37954716 | 5.72E-35 | dispersed | |
Lcy6g0640 | Lcy-Chr6:6095079 | Lcy13g1934 | Lcy-Chr13:38364668 | 1.01E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20256 | None | None | None | None | Lcy | TF |
Pathway information
