Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0640 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGCTAAGTCACATTCGAGAGAGAGACCTACCGAGACAAAAGTTAAACCGTTGTCTGAAAGGGAATTATCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCCTGTCTATACAAGGTGGATCTGGGGACTTCATGACAGATAGAACATTGCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAATTTTGAGAGCTGGTGACGTTGAACTGGACGACGACGATGAGTGCTCGGGTCATGTTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAGGGTTCAACATTGCTCACATAACGGTACATTCTCGAAACGAAGGAGGCAGTTCTAG 891 47.81 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSRERPTETKVKPLSERELSMPSPGELSRSLSIQGGSGDFMTDRTLLTGDSVSGGFSQWQMDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPILRAGDVELDDDDECSGHVPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSERVQHCSHNGTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6095079 6098035 + Maker00004253 Lcy6g0640 635084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0640 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Lcy6g0640 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy6g0640 296 FunFam B-box zinc finger protein 22 1 93 - -
Lcy6g0640 296 MobiDBLite consensus disorder prediction 226 247 - -
Lcy6g0640 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy6g0640 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 MobiDBLite consensus disorder prediction 115 150 - -
Lcy6g0640 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 MobiDBLite consensus disorder prediction 121 135 - -
Lcy6g0640 296 Gene3D Classic Zinc Finger 1 92 - -
Lcy6g0640 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0650 Lcy-Chr1:5566956 Lcy6g0640 Lcy-Chr6:6095079 1.64E-22 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy6g0640 Lcy-Chr6:6095079 7.21E-41 dispersed
Lcy6g0640 Lcy-Chr6:6095079 Lcy8g1159 Lcy-Chr8:37954716 5.72E-35 dispersed
Lcy6g0640 Lcy-Chr6:6095079 Lcy13g1934 Lcy-Chr13:38364668 1.01E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0007 . 137 514 Orphan Transcription Factor Family AT5G61850 69.3 3.9e-125 445.7
Lcy3g1220 . 101 267 Orphan Transcription Factor Family AT1G06040 68.4 6.3e-61 231.1
Lcy6g0640 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20256 None None None None Lcy TF