Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0640 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGCTAAGTCACATTCGAGAGAGAGACCTACCGAGACAAAAGTTAAACCGTTGTCTGAAAGGGAATTATCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCCTGTCTATACAAGGTGGATCTGGGGACTTCATGACAGATAGAACATTGCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAATTTTGAGAGCTGGTGACGTTGAACTGGACGACGACGATGAGTGCTCGGGTCATGTTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAGGGTTCAACATTGCTCACATAACGGTACATTCTCGAAACGAAGGAGGCAGTTCTAG 891 47.81 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSRERPTETKVKPLSERELSMPSPGELSRSLSIQGGSGDFMTDRTLLTGDSVSGGFSQWQMDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPILRAGDVELDDDDECSGHVPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSERVQHCSHNGTFSKRRRQF 296
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 6095079 6098035 + Maker00004253 Lcy6g0640 635084
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0640 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Lcy6g0640 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy6g0640 296 FunFam B-box zinc finger protein 22 1 93 - -
Lcy6g0640 296 MobiDBLite consensus disorder prediction 226 247 - -
Lcy6g0640 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy6g0640 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 MobiDBLite consensus disorder prediction 115 150 - -
Lcy6g0640 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 MobiDBLite consensus disorder prediction 121 135 - -
Lcy6g0640 296 Gene3D Classic Zinc Finger 1 92 - -
Lcy6g0640 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy6g0640 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0650 Lcy-Chr1:5566956 Lcy6g0640 Lcy-Chr6:6095079 1.64E-22 dispersed
Lcy3g1220 Lcy-Chr3:37646038 Lcy6g0640 Lcy-Chr6:6095079 7.21E-41 dispersed
Lcy6g0640 Lcy-Chr6:6095079 Lcy8g1159 Lcy-Chr8:37954716 5.72E-35 dispersed
Lcy6g0640 Lcy-Chr6:6095079 Lcy13g1934 Lcy-Chr13:38364668 1.01E-34 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20256 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0640 - - - 0.0