Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0645 ATGTTTCTGTATAAACAAATTTCGCCATGCACGATCTGCCATGTCATTATTGGCCATTTTTTACAGACCCCTGCCTTAACTATTCCTTGCACTTATACCCCACAACTTTTCTTTCTTCTTCTTCTCCTCCTCCCATGGAGATTTGCAGAAACACTTCGTTTCCTTTGCTCAGTTGAATCTCTAATCCAATTTTCTTCTCTCATTTCTTTCCAACTACTCTTCCTTCACTTCGAATCGTTTCGTTTGTTCGCCTTTCGCCGTCAATTGAAAGAAACCCCCACTCACTCGTTTTCTTCTTCTTTTACCACCACTGCCAACTGTTTCTCCTCCTCTCGCTGCGCGGCTATGGCTTTTCGAAGTTCTCTATTCAGGATTCTCGGCGTTCTACTCTTGTGGATTTTGCTGTTCCATGGATTTGGATCCGGCGCTCAGCTTTTGCCAGAAACCGAAGTGAAAAACCTCCAAACAATATCTTCAAAACTAAAGAATTTAAACTGGAATGTTACGCGGAATTCTTGCATTCAAGGTGAAGGCTTTTCCAATAGAGATATTCAGGGAAACCAAATCTTGAGGAATGTCTCATGCAACTGTACTTCCACTGTTTGTCATGTGACAATCATCCTGCTTAAGGGTCTCAATCTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTTCAGGAACTTGATCTTACTCGCAACCATATTAATGGCCAACTACCCGCTAGTCTTGCCAATGTTCCTCTTGTCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATAGGTGACATTGGCACCCTTGAAGAGCTGGTCTTGGAAGACAACCAGCTAACTGGAAATCTACCTCCCAGCCTTGGGAATCTGAACCGTTTGAATAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGATTCATTTGGAAAATTAAAGAGCTTGGTTGATTTTAGGATAGATGGGAATGGACTGTCTGGGAAGATTCCGGAATTCATTGGGAATTGGATCAACCTTGAGAGACTGGATATTCAAGGAACATCGATGGAAAACCCCATTCCTTCTACAATATCTCAATTGAAGAACCTAACTGAATTGAGGATATCTGATTTGAAGGGATCATTTATAAGTTTCCCAAATTTGACAGATATGATAAATATGGAAGAATTGGTCCTTAGGAACTGTTTAATTAATAGTTCAATTCCGGAGTATATTGGAGAAATGAATAAATTATCAACTCTAGATCTAAGCTTCAACCAGTTGACTGGTCCAATTCCTGAGACATTTCAGAATCTGATAAAGAAAAAGATAGACTTCATGTTTTTGACAAACAACTCACTGAGTGGTGAAGTGCCAGGTTGGATCTTGAGGAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTACAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGGTTGCCAGTTACCCACCTGCAGCAAATCATCAACTTCCTTGGTGCCTCAAGAAGGACCTTCCATGCCCTGGAAAAGCTGAACATCATTCCTTGTTTATTAATTGCGGAGGAACCAGATTGAGGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTGTTTCAGAAAAATGGGCTTATAGCAGTACAGGAGTTTTTGTGGGTGATGAAAATGCTGACTACTTAGCTACAAATAAGTTTGGCCTGAATGTGAGTGGTCCGCGCTATTATCAAAGTGCCCGACTTTCCCCTCTCTCCCTCAAATATTATGGTCTTTGCCTGATGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACTCTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTGTATTTGATATATCAATTCAAGTAATTAGCTCAGACATGAATGATGATGGATTAAGAATTTCAGTTGTTCATCAGCTGTACTACATTCTACAGGGAAAACTAGTTAAGAAGGATTTCAACATTGTGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAGAAATGTTCTTGTTAATGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACACCGAACTTTGAAATCGACGAGGGAGGACTGTCGGCTGGAGCACTTGCCGGCATCATAATTTCTTCATGTGCAGTAGTTATCATGTTGATTATCGTATTTCTTTGGATGAAAGGTTACATGTGTAAGAAGGAAGTCCTAGATAATGAACTTTCCGGCGTAGATTTACAAACAGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAGGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCAAAATCGAAACAAGGGAGCCGTGAGTTTGTCACTGAGATTGGCATGATATCTGCATTGCAACACCCAAATCTCGTGAAGCTCTATGGCTGCTGTGTTGAGGGAAATCAATTGTTGCTTGTATATGAATACATGGAAAACAATAGTCTTGCTCGTGCACTTTTTGGTCGAGAGGAACAGAGACTACAGCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAGATAGCAAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCTACGAATGTGCTGCTCGATAAAGATCTCAATGCCAAAATTTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACCCACATAAGCACACGAATTGCTGGAACCATGTACTCTCTCTCTCTTTGTTTGCGCATGCGTGCATGCATAAACTTACATATCGGTTACATGGCACCTGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAGTTGTTGCCTTAGAGATAGTTAGTGGGAAAAGTAACACAAATTACAGGCCAAAGGAAGAGTTCGTTTATCTTCTTGATTGGGCCTATGTGCTGGAAGAGCAGGGAAACCTTCTAGAACTGGTTGATCCAGACCTTGGTTCAAAGTACTCATCAGAGGAAGCAATGAGGATGCTGAACATAGCTCTCTTATGCACCAACCCATCTCCCACACTCAGACCAGCCATGTCCTCTGTGGTGAGCATGCTAGAAGGTAAGATTGCAGTCCAGGCACCGATCATCAAGCGCACTTCGTCGGCCCAAGATCCAAGGTTTAAAGCGTTCGAGAAGCTCTCACATGACAGCAGATCACAGATTTCAAGCTCAACTCTTTCGGAAGATGTTGAGGCTCAGAAGAGCATATTAATGGACGGACCATGTACTGATTCCTCAGTATCCATTGACAACAATGGCAATAATCTCTACCATTCTGCATCGAGTGACCCCCTCGAAAATCGTCGTCGTGTTGATGATATGAAACCGTCAGCTAAGTAG 3558 41.91 MFLYKQISPCTICHVIIGHFLQTPALTIPCTYTPQLFFLLLLLLPWRFAETLRFLCSVESLIQFSSLISFQLLFLHFESFRLFAFRRQLKETPTHSFSSSFTTTANCFSSSRCAAMAFRSSLFRILGVLLLWILLFHGFGSGAQLLPETEVKNLQTISSKLKNLNWNVTRNSCIQGEGFSNRDIQGNQILRNVSCNCTSTVCHVTIILLKGLNLTGTFPAEFGNLTHLQELDLTRNHINGQLPASLANVPLVKLSLLGNRLNGSIPKEIGDIGTLEELVLEDNQLTGNLPPSLGNLNRLNRLLLSANNFTGKIPDSFGKLKSLVDFRIDGNGLSGKIPEFIGNWINLERLDIQGTSMENPIPSTISQLKNLTELRISDLKGSFISFPNLTDMINMEELVLRNCLINSSIPEYIGEMNKLSTLDLSFNQLTGPIPETFQNLIKKKIDFMFLTNNSLSGEVPGWILRSKKNIDLSYNNFTGSTLASCQQSPVNLVASYPPAANHQLPWCLKKDLPCPGKAEHHSLFINCGGTRLRADGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFVGDENADYLATNKFGLNVSGPRYYQSARLSPLSLKYYGLCLMSGSYNVKLHFAEIMYSNDQTFSSLGKRVFDISIQVISSDMNDDGLRISVVHQLYYILQGKLVKKDFNIVEAAGGVGKNFTVEDRNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFEIDEGGLSAGALAGIIISSCAVVIMLIIVFLWMKGYMCKKEVLDNELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLQLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTMYSLSLCLRMRACINLHIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSKYSSEEAMRMLNIALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSAQDPRFKAFEKLSHDSRSQISSSTLSEDVEAQKSILMDGPCTDSSVSIDNNGNNLYHSASSDPLENRRRVDDMKPSAK 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6125235 6138482 + Maker00004218 Lcy6g0645 635089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0645 1185 CDD STKc_IRAK 809 1093 - -
Lcy6g0645 1185 SUPERFAMILY L domain-like 183 440 - -
Lcy6g0645 1185 SMART serkin_6 803 1089 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0645 1185 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 772 878 - -
Lcy6g0645 1185 MobiDBLite consensus disorder prediction 1169 1185 - -
Lcy6g0645 1185 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
Lcy6g0645 1185 Pfam Leucine Rich Repeat 418 440 IPR001611 GO:0005515(InterPro)
Lcy6g0645 1185 Pfam Leucine Rich Repeat 275 296 IPR001611 GO:0005515(InterPro)
Lcy6g0645 1185 Pfam Leucine Rich Repeat 299 320 IPR001611 GO:0005515(InterPro)
Lcy6g0645 1185 Gene3D Ribonuclease Inhibitor 151 274 IPR032675 -
Lcy6g0645 1185 MobiDBLite consensus disorder prediction 1147 1185 - -
Lcy6g0645 1185 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 150 312 - -
Lcy6g0645 1185 Gene3D - 518 733 - -
Lcy6g0645 1185 MobiDBLite consensus disorder prediction 1147 1168 - -
Lcy6g0645 1185 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 313 380 - -
Lcy6g0645 1185 FunFam Putative LRR receptor-like serine/threonine-protein kinase 879 1103 - -
Lcy6g0645 1185 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 128 1117 IPR051824 -
Lcy6g0645 1185 Pfam Protein tyrosine and serine/threonine kinase 806 1089 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0645 1185 ProSiteProfiles Protein kinase domain profile. 803 1102 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0645 1185 Pfam Malectin domain 665 728 IPR021720 -
Lcy6g0645 1185 Pfam Malectin domain 523 642 IPR021720 -
Lcy6g0645 1185 Gene3D Phosphorylase Kinase; domain 1 769 878 - -
Lcy6g0645 1185 Gene3D Transferase(Phosphotransferase) domain 1 879 1104 - -
Lcy6g0645 1185 Gene3D Ribonuclease Inhibitor 280 381 IPR032675 -
Lcy6g0645 1185 Gene3D Ribonuclease Inhibitor 382 491 IPR032675 -
Lcy6g0645 1185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0645 1185 SUPERFAMILY Protein kinase-like (PK-like) 788 1092 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0645 Lcy-Chr6:6125235 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy6g0645 Lcy-Chr6:6125235 Lcy9g1375 Lcy-Chr9:38622455 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66017 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0645 - - - 0.0