Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0647 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTTCTGGACTAAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGACAACAACGAAGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGCACTACTTATCGTAAGGGTTTTGGCTGGTATTTGCCCTGTGGAGACACTAGACCGAAATGCGTTCTCACTACCAGCCATATTCATGCGGTAATTGGACCATGTTCTCGTAGACTGAGGATTTTAGTGGTCAACCGCCGTATCCCTGGGTATTGGAATTCTAGCTTTATGTACGCCACCTTTAGACTGCTACCGTGGATTAATTTGTGGGTTTCTCTCGAGTTGGGGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGTCCCGGCTCATCCTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGCTAATCCGAATGCTGATGGCAGTTCACTCATCCCATGGCTTAAAAACCTGTCATCTTCATCATCTTCAGCATCCTCGTCCAAACTCCCCAATCTCTACATTCATGGAGGTTCCATCAGTGCTCCTGTCACACCTCCTCTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAAGCTGACTGGGAGGAACAGACCGTCCTGCCGGGATGGAGTGCCCAATACTATTCCTCCCTGCCATCTTCTACTCCACCAAGTCCCGGGCGTCAGATTGTTCCCAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTGGTTTCTACTAACCCATTTGGTTTCAAGGAAGCAGCAACAAATGGTGGAGGCTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCCCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGAAGCAATGCAGCAGGAATTGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGACGACCTAGAGCTGACTCTTGGGAACTCAAGGACCAGGTAA 1188 50.08 MTSGTRLPTWRERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGFGWYLPCGDTRPKCVLTTSHIHAVIGPCSRRLRILVVNRRIPGYWNSSFMYATFRLLPWINLWVSLELGGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVANPNADGSSLIPWLKNLSSSSSSASSSKLPNLYIHGGSISAPVTPPLSSPTARTPRLKADWEEQTVLPGWSAQYYSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAATNGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6145967 6149869 - Maker00004163 Lcy6g0647 635091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0647 395 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 74 IPR008540 -
Lcy6g0647 395 Pfam BES1/BZR1 plant transcription factor, N-terminal 143 209 IPR008540 -
Lcy6g0647 395 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 143 395 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy6g0647 395 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1802 Lcy-Chr5:40762427 Lcy6g0647 Lcy-Chr6:6145967 6.81E-144 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20257 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0647 - - - 0.0