Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0647 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTTCTGGACTAAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGACAACAACGAAGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGCACTACTTATCGTAAGGGTTTTGGCTGGTATTTGCCCTGTGGAGACACTAGACCGAAATGCGTTCTCACTACCAGCCATATTCATGCGGTAATTGGACCATGTTCTCGTAGACTGAGGATTTTAGTGGTCAACCGCCGTATCCCTGGGTATTGGAATTCTAGCTTTATGTACGCCACCTTTAGACTGCTACCGTGGATTAATTTGTGGGTTTCTCTCGAGTTGGGGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGTCCCGGCTCATCCTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGCTAATCCGAATGCTGATGGCAGTTCACTCATCCCATGGCTTAAAAACCTGTCATCTTCATCATCTTCAGCATCCTCGTCCAAACTCCCCAATCTCTACATTCATGGAGGTTCCATCAGTGCTCCTGTCACACCTCCTCTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAAGCTGACTGGGAGGAACAGACCGTCCTGCCGGGATGGAGTGCCCAATACTATTCCTCCCTGCCATCTTCTACTCCACCAAGTCCCGGGCGTCAGATTGTTCCCAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTGGTTTCTACTAACCCATTTGGTTTCAAGGAAGCAGCAACAAATGGTGGAGGCTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCCCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGAAGCAATGCAGCAGGAATTGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGACGACCTAGAGCTGACTCTTGGGAACTCAAGGACCAGGTAA 1188 50.08 MTSGTRLPTWRERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGFGWYLPCGDTRPKCVLTTSHIHAVIGPCSRRLRILVVNRRIPGYWNSSFMYATFRLLPWINLWVSLELGGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVANPNADGSSLIPWLKNLSSSSSSASSSKLPNLYIHGGSISAPVTPPLSSPTARTPRLKADWEEQTVLPGWSAQYYSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAATNGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6145967 6149869 - Maker00004163 Lcy6g0647 635091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0647 395 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 74 IPR008540 -
Lcy6g0647 395 Pfam BES1/BZR1 plant transcription factor, N-terminal 143 209 IPR008540 -
Lcy6g0647 395 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 143 395 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy6g0647 395 MobiDBLite consensus disorder prediction 1 20 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0647 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1802 Lcy-Chr5:40762427 Lcy6g0647 Lcy-Chr6:6145967 6.81E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G75080 60.2 1.5e-87 320.5
Lcy1g0738 . 28 347 BZR Transcription Factor Family AT1G75080 54.0 1.0e-75 281.2
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G19350 58.9 8.2e-86 314.7
Lcy1g0738 . 28 345 BZR Transcription Factor Family AT1G19350 54.3 3.6e-73 272.7
Lcy1g0738 . 6 347 BZR Transcription Factor Family AT3G50750 52.9 1.1e-72 270.8
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT3G50750 50.8 5.2e-62 235.3
Lcy5g1802 . 108 357 BZR Transcription Factor Family AT4G18890 52.9 2.6e-50 196.1
Lcy6g0647 . 147 396 BZR Transcription Factor Family AT4G18890 52.8 3.4e-50 195.7
Lcy6g0647 . 1 396 BZR Transcription Factor Family AT1G78700 61.4 2.3e-109 392.9
Lcy5g1802 . 1 357 BZR Transcription Factor Family AT1G78700 63.2 9.7e-100 360.9
Lcy1g0738 . 28 228 BZR Transcription Factor Family AT4G36780 67.8 4.0e-59 225.7
Lcy13g2004 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 2.4e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20257 None None None None Lcy TF