Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0658 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCCAAGTCGTCGTGTAGAGATCCGAATGGTGTCGGAGGAGGAGGACTTCTTCGAGTTCCTTCGTCGGACCTCGACGATCCCTCCGCCTTTCCCGGCGGGACTGGCGGTGACCGGATTGAGGCTGAATCTGCTTGGTCCTCCATGCTACCCGAGCTTCTCCGGGAGATCATTCAGCGGGTCGAGGCTTCTGAGGACACTTGGCCCAACCGCCAGAACGTCGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGACATTACTAAGGAGATCGTCAAGGCTGCCTCTCATTCCGGGAAAATCACTTTCCCTTCTTGCCTCAAGCAGGATCATCAGCCTGGACCAAGCGATAATCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCTCGGAGATATAGGCATGGAGCTCATACGGAGTATATAATATCTCTTGACGCTGAAGACTTATCCCAAGGAAGCAATGCTTACATGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACAATTTACGATAGCCAACCACCACATAATGGAGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGCCCGAGGAGAATGATATGCTCTCTAAAGTGCCCACTGTCAGAAGACACTGGCACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAGTCTTTTTCATCTTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGCCGGGTGACAGTAGCATCAGTTAAAAACTTTCAACTTGTCGCTACTGTTGATCATAGCCAGCCAGGAGGCAAAGGGGACGAAGAAACAGTCCTCCTACAGTTTGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGCGAGTAG 1173 48.17 MSLRRSFLSRRFSSKSSCRDPNGVGGGGLLRVPSSDLDDPSAFPGGTGGDRIEAESAWSSMLPELLREIIQRVEASEDTWPNRQNVVSCACVCKRWRDITKEIVKAASHSGKITFPSCLKQDHQPGPSDNPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYMGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPLSEDTGTSKPCENSKMKKSESFSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6240940 6245348 - Maker00004277 Lcy6g0658 635102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0658 390 Gene3D - 53 104 - -
Lcy6g0658 390 Gene3D Tubby Protein; Chain A 113 390 IPR025659 -
Lcy6g0658 390 MobiDBLite consensus disorder prediction 13 50 - -
Lcy6g0658 390 SUPERFAMILY Tubby C-terminal domain-like 112 390 IPR025659 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 176 192 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Lcy6g0658 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Lcy6g0658 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Lcy6g0658 390 MobiDBLite consensus disorder prediction 210 230 - -
Lcy6g0658 390 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Lcy6g0658 390 CDD F-box_AtTLP-like 58 102 - -
Lcy6g0658 390 PANTHER TUBBY-RELATED 52 389 - -
Lcy6g0658 390 Pfam F-box domain 58 101 IPR001810 GO:0005515(InterPro)
Lcy6g0658 390 Pfam Tub family 124 385 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0658 Lcy-Chr6:6240940 Lcy6g0905 Lcy-Chr6:9221119 1.36E-121 dispersed
Lcy6g0658 Lcy-Chr6:6240940 Lcy13g0203 Lcy-Chr13:2099147 2.64E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20258 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0658 K19600 - csv:101211968 642.114