Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0666 TCCACTTTCGAGGGCTTTGAAGCTTCTTCTGGGTTTCTGCTTGTTGTTTTGTTTTGTGGGAATCTGAGGGTTTTCGATCTGGGGAGCGAGGAGGAGGAAGAAGAAGATGCCGCAAGATCATCCAAAGAAGGGGTCAGGGATTTAGAGAGGAAAAGGGAAGTGTACTTGGATTTGGAGGCCAAAGAAATCAACTTTTTTACTGAATATGGGGATGCTAATAGATATGAGATTCTTGAAGTTATTGGAAAGGGAAGTTACGGAGTTGTTTGTTCAGCTATTGACTTGCAAACCAGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGTATCTGATGCTATTCGAATCCTTCGTGAAGTGAAGTTGCTTAGATTGTTACGGCATCCTGATATTGTTGACATCAAGCATATTATGCTCCCACCTTCTAAAAAGGAATTTAAAGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACTCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATTCAGCAAATGTGTATCATAGAGATCTGAAGCCAAAGAATATATTGGCAAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGATGCCCCAACTACAATATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGCTGTGTGGATCATTCTGTTCCAAGGTAGGCAGTAAACTAATTCACATTGAACACTACCTCTATCAAGGCACAACATCTTCGGGTGATTTACTGGCCATGGCTCAGTTGGAATTACTTTCATTTTCATCATGTATAAAATATATTTGGAGCATTGGCTGCATATTTGCTGAGGTCTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACCGATCTTCTAGGGACTCCCTCATTAGAGACCATTGCAGGAGTTCGGAATGAGAAGGCCAGGAAATACTTGACAGAAATGAGAAAGAAATCTCCAGTGCCGTTTTCACAAAGGTTTCCCAATGCGGATCCTACAGCCATCTGCTTATTGCAAAGGCTATTAGCATTTGATCCGAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCGGAATTCGAGTTCGAGAGACGGAAATTAACGAAGGATGATTCTCCTATCAATGTCAGCGTTACAGGTCATTTTAAAAGCCAATTCACTTACCACAAGGAGAATAGTGGTAAAAGTGCACCGGTTTTGCCTCTAGAACGGAAACACTTCTCCTTGCCACGGTCTACTGTTTGCACAAATTTGGTTTCACCCGATCGTGAGCCAGTTCGGCGAAATCCCAAAGTCTCTAATAATAGTGTGGTATTACCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTACTGGTATGAACATATTTCTCTCCTGTTTTCCCCCTCTAAAGTTTCTCTTTTTTCAATGGACAAGTTCTGTTAGGGTATTTGACTTGTATCTTTTGAGAATCTGTTAG 1656 41.24 STFEGFEASSGFLLVVLFCGNLRVFDLGSEEEEEEDAARSSKEGVRDLERKREVYLDLEAKEINFFTEYGDANRYEILEVIGKGSYGVVCSAIDLQTREKVAIKRIHDIFDHVSDAIRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHSANVYHRDLKPKNILANANCKLKICDFGLARVAFSDAPTTIFWTDYVATRWYRAPELCGSFCSKVGSKLIHIEHYLYQGTTSSGDLLAMAQLELLSFSSCIKYIWSIGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKSPVPFSQRFPNADPTAICLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDSPINVSVTGHFKSQFTYHKENSGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKVSNNSVVLPDRKFGNPSKAHPPPKVPTGMNIFLSCFPPLKFLFFQWTSSVRVFDLYLLRIC 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6343868 6347779 + Maker00004194 Lcy6g0666 635110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0666 551 SMART serkin_6 75 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0666 551 ProSiteProfiles Protein kinase domain profile. 75 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0666 551 Pfam Protein kinase domain 297 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0666 551 Pfam Protein kinase domain 75 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0666 551 MobiDBLite consensus disorder prediction 479 512 - -
Lcy6g0666 551 SUPERFAMILY Protein kinase-like (PK-like) 72 423 IPR011009 -
Lcy6g0666 551 Gene3D Phosphorylase Kinase; domain 1 73 429 - -
Lcy6g0666 551 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 72 430 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy6g0666 551 Gene3D Transferase(Phosphotransferase) domain 1 159 426 - -
Lcy6g0666 551 FunFam Mitogen-activated protein kinase 64 169 - -
Lcy6g0666 551 CDD STKc_TDY_MAPK 74 430 - -
Lcy6g0666 551 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Lcy6g0666 551 FunFam Mitogen-activated protein kinase 159 270 - -
Lcy6g0666 551 ProSitePatterns MAP kinase signature. 110 213 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0666 Lcy-Chr6:6343868 Lcy8g1622 Lcy-Chr8:42791873 5.17E-211 dispersed
Lcy1g0261 Lcy-Chr1:2355658 Lcy6g0666 Lcy-Chr6:6343868 1.74E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66019 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0666 - - - 0.0