Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0683 ATGGTAGTTGCCTCCCAATGGAAAGCCAAGATCCTACGGCAGCTTCGTCAGGAAACTGCTGCAAGGGCTGAAAGTTATATACAGGTAACTCCTGATGAAGCTCAACTACTTGCGATGCTTGTTCAGATTCTTGGGGCAGAACGGTGCATTGAAGTTGGTGTTTACACAATCTCCTTTACCAAGGAGTTTGCTCTTAGAGTCAAATTACGGATTCTATCTGTCCAAATCTCCTTTACTAAGGAGTTCGCTCTTAGACACTCGAGGATTTTAACGAAACAGCTACATCAGGGGTATGGCTCTGATACCACCTATTATGACAATGGACACTCCACATATCTCCACAATGGTATGATATTGGCCACTTTGGGCATAAGCCTTCATGGCTTTGCTTTTGGTTCCACCCAAAAGGGTTATTCATCCTTGGCTGTTGCACTTGCCCTCCCAGAATCAGGACGTTTAGTTGCCTGTGAATATGATGCCGAAGTTCTTGAGATTGCAAGAATATATTATGAACGTGCTGGTGTTTCACACAAAGTGGATGTGAGACATGGACCTGCAGAAGAAACGCTAGAATCACTTATTGCAAATGGTGAAGCTTGCAGCTATGATTATGCTTTTCTTGATGCTGACAAGAATTTGTACGAGGAATTCTTTGAACTGTTGCTACAACTGGTGAGAGTTGGAGGAGTGATTGTCATTGACAATGTCCTTTGGAGTGGAAAGGTTGCTGACCCAATGGTAAATGATGAGTGGACCATTAGCATCCGAAAATTCAACGAAAAGCTAATGAAAGACGATCGAGTCAATATCAGTATGGTACCAATTGGAGATGGTGTGACAATTTGTCGAAAGAAATGA 858 42.77 MVVASQWKAKILRQLRQETAARAESYIQVTPDEAQLLAMLVQILGAERCIEVGVYTISFTKEFALRVKLRILSVQISFTKEFALRHSRILTKQLHQGYGSDTTYYDNGHSTYLHNGMILATLGISLHGFAFGSTQKGYSSLAVALALPESGRLVACEYDAEVLEIARIYYERAGVSHKVDVRHGPAEETLESLIANGEACSYDYAFLDADKNLYEEFFELLLQLVRVGGVIVIDNVLWSGKVADPMVNDEWTISIRKFNEKLMKDDRVNISMVPIGDGVTICRKK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6636380 6643844 + Maker00004203 Lcy6g0683 635127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0683 285 Pfam O-methyltransferase 7 56 IPR002935 GO:0008171(InterPro)
Lcy6g0683 285 Pfam O-methyltransferase 135 285 IPR002935 GO:0008171(InterPro)
Lcy6g0683 285 Gene3D Vaccinia Virus protein VP39 133 285 IPR029063 -
Lcy6g0683 285 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 66 285 IPR002935 GO:0008171(InterPro)
Lcy6g0683 285 CDD AdoMet_MTases 141 233 - -
Lcy6g0683 285 Gene3D Vaccinia Virus protein VP39 3 90 IPR029063 -
Lcy6g0683 285 PANTHER O-METHYLTRANSFERASE-RELATED 9 56 IPR050362 GO:0008757(PANTHER)
Lcy6g0683 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 285 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0683 Lcy-Chr6:6636380 Lcy9g1066 Lcy-Chr9:34474792 2.00E-33 dispersed
Lcy6g0683 Lcy-Chr6:6636380 Lcy6g0684 Lcy-Chr6:6645411 4.59E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0683 - - - 0.0